miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16401 5' -54.4 NC_004084.1 + 3454 0.66 0.783246
Target:  5'- -cUGUCGgaUCGCGAGCGCcggGGGAaUACg -3'
miRNA:   3'- guGCAGUg-AGCGCUCGUG---UCCUaGUG- -5'
16401 5' -54.4 NC_004084.1 + 21169 0.66 0.7732
Target:  5'- --aGUC-CUCGaCGAGCGcCGGGA-CGCg -3'
miRNA:   3'- gugCAGuGAGC-GCUCGU-GUCCUaGUG- -5'
16401 5' -54.4 NC_004084.1 + 22987 0.66 0.752677
Target:  5'- cCugGUCGacCUCGCGAGCGa--GAUCGa -3'
miRNA:   3'- -GugCAGU--GAGCGCUCGUgucCUAGUg -5'
16401 5' -54.4 NC_004084.1 + 2154 0.67 0.731658
Target:  5'- gACGUCguACUCguagGCGAcaccaGCACGGGAgucgUCACg -3'
miRNA:   3'- gUGCAG--UGAG----CGCU-----CGUGUCCU----AGUG- -5'
16401 5' -54.4 NC_004084.1 + 4608 0.67 0.728468
Target:  5'- aCACGUCuacggcggagaaacGCUCGUG-GCAgAGG-UCACc -3'
miRNA:   3'- -GUGCAG--------------UGAGCGCuCGUgUCCuAGUG- -5'
16401 5' -54.4 NC_004084.1 + 58046 0.67 0.688504
Target:  5'- gACGUCcccggGCUCGCG-GCACAGuuUCGa -3'
miRNA:   3'- gUGCAG-----UGAGCGCuCGUGUCcuAGUg -5'
16401 5' -54.4 NC_004084.1 + 35356 0.68 0.67755
Target:  5'- uCGCGUCGCcggcgacgaUCGCGAaguGCGCcaaGAUCACg -3'
miRNA:   3'- -GUGCAGUG---------AGCGCU---CGUGuc-CUAGUG- -5'
16401 5' -54.4 NC_004084.1 + 19270 0.68 0.666553
Target:  5'- aGCGUCGucgccCUCGCGAGCuuuauacuucagGCucuccGGGUCACc -3'
miRNA:   3'- gUGCAGU-----GAGCGCUCG------------UGu----CCUAGUG- -5'
16401 5' -54.4 NC_004084.1 + 29507 0.68 0.655523
Target:  5'- gACGUCGCUCuCGGGCACAcccgcuUCGCc -3'
miRNA:   3'- gUGCAGUGAGcGCUCGUGUccu---AGUG- -5'
16401 5' -54.4 NC_004084.1 + 3930 0.68 0.644471
Target:  5'- gGCGUC-CUCGaaccggcuuuUGaAGUGCAGGGUCGCg -3'
miRNA:   3'- gUGCAGuGAGC----------GC-UCGUGUCCUAGUG- -5'
16401 5' -54.4 NC_004084.1 + 52216 0.68 0.633407
Target:  5'- gGCGUCGguCUCGCGAGC-CucGAUCGa -3'
miRNA:   3'- gUGCAGU--GAGCGCUCGuGucCUAGUg -5'
16401 5' -54.4 NC_004084.1 + 28930 0.68 0.626768
Target:  5'- gACGUCGgcCUCGgGAGCGCgucgacagcgucgauGGGcAUCGCg -3'
miRNA:   3'- gUGCAGU--GAGCgCUCGUG---------------UCC-UAGUG- -5'
16401 5' -54.4 NC_004084.1 + 16453 0.68 0.622343
Target:  5'- uUACGggCAUgggCGCGAGCGCAG--UCGCg -3'
miRNA:   3'- -GUGCa-GUGa--GCGCUCGUGUCcuAGUG- -5'
16401 5' -54.4 NC_004084.1 + 7080 0.69 0.578267
Target:  5'- -cCGUCGacgaagauCUCGCGGGCGCAcucGAUCGCc -3'
miRNA:   3'- guGCAGU--------GAGCGCUCGUGUc--CUAGUG- -5'
16401 5' -54.4 NC_004084.1 + 27894 0.72 0.422971
Target:  5'- aGCGUCAUUCGCGcucGCGCAGc-UCGCg -3'
miRNA:   3'- gUGCAGUGAGCGCu--CGUGUCcuAGUG- -5'
16401 5' -54.4 NC_004084.1 + 18181 1.08 0.001424
Target:  5'- gCACGUCACUCGCGAGCACAGGAUCACc -3'
miRNA:   3'- -GUGCAGUGAGCGCUCGUGUCCUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.