miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16404 3' -54.4 NC_004084.1 + 20080 0.66 0.766372
Target:  5'- cGCCggagCG-AACCGGaaGAcGACCGUCGAUa -3'
miRNA:   3'- uUGGa---GCuUUGGUC--CU-CUGGCAGCUA- -5'
16404 3' -54.4 NC_004084.1 + 49664 0.66 0.756012
Target:  5'- uACCggcUGAAGCCGGGuGGuCCGUCGu- -3'
miRNA:   3'- uUGGa--GCUUUGGUCCuCU-GGCAGCua -5'
16404 3' -54.4 NC_004084.1 + 27562 0.66 0.756012
Target:  5'- gGGCCUccCGGAcggucGCCAGGAGGCagCGUCGc- -3'
miRNA:   3'- -UUGGA--GCUU-----UGGUCCUCUG--GCAGCua -5'
16404 3' -54.4 NC_004084.1 + 39544 0.66 0.749732
Target:  5'- -uCCUCGugauGGCCAGcGcgaucgacucgaccgGGACCGUCGAc -3'
miRNA:   3'- uuGGAGCu---UUGGUC-C---------------UCUGGCAGCUa -5'
16404 3' -54.4 NC_004084.1 + 38456 0.66 0.745521
Target:  5'- cGGCCUCGAgGAUCGcGAGACCGugaUCGGg -3'
miRNA:   3'- -UUGGAGCU-UUGGUcCUCUGGC---AGCUa -5'
16404 3' -54.4 NC_004084.1 + 36476 0.66 0.744466
Target:  5'- aGAUCUCGAucccgcacuucAACCGGGAcuacuggGGCCGaUCGAa -3'
miRNA:   3'- -UUGGAGCU-----------UUGGUCCU-------CUGGC-AGCUa -5'
16404 3' -54.4 NC_004084.1 + 21330 0.66 0.734913
Target:  5'- aGACCUCGAggucgguacuGACgAGGAGgACC-UCGAc -3'
miRNA:   3'- -UUGGAGCU----------UUGgUCCUC-UGGcAGCUa -5'
16404 3' -54.4 NC_004084.1 + 28004 0.66 0.734913
Target:  5'- -gUCUCGAGGCCGGGGuauucgUCGUCGAa -3'
miRNA:   3'- uuGGAGCUUUGGUCCUcu----GGCAGCUa -5'
16404 3' -54.4 NC_004084.1 + 3084 0.66 0.724199
Target:  5'- cGAUCUCGAuACU--GAGACCGUCGc- -3'
miRNA:   3'- -UUGGAGCUuUGGucCUCUGGCAGCua -5'
16404 3' -54.4 NC_004084.1 + 55828 0.66 0.724199
Target:  5'- cACCUCGGcgucguCCGGGAuGCCGUCa-- -3'
miRNA:   3'- uUGGAGCUuu----GGUCCUcUGGCAGcua -5'
16404 3' -54.4 NC_004084.1 + 5641 0.67 0.717725
Target:  5'- aAGCaCUCGAGGCUGGcGAGcggauccagaaagccACCGUCGAc -3'
miRNA:   3'- -UUG-GAGCUUUGGUC-CUC---------------UGGCAGCUa -5'
16404 3' -54.4 NC_004084.1 + 17565 0.67 0.713391
Target:  5'- cGAUCUCGAcGGCCAguucGGGGACC-UCGAc -3'
miRNA:   3'- -UUGGAGCU-UUGGU----CCUCUGGcAGCUa -5'
16404 3' -54.4 NC_004084.1 + 52901 0.67 0.669455
Target:  5'- cGACCUCGAGGCCaagcAGGAG---GUCGAg -3'
miRNA:   3'- -UUGGAGCUUUGG----UCCUCuggCAGCUa -5'
16404 3' -54.4 NC_004084.1 + 2708 0.68 0.647225
Target:  5'- cGCCUCGAucUCGagguGGAGGCgGUCGAa -3'
miRNA:   3'- uUGGAGCUuuGGU----CCUCUGgCAGCUa -5'
16404 3' -54.4 NC_004084.1 + 16819 0.68 0.610461
Target:  5'- gGACCcaUCGAGAUggcuccaggcagggCGGGAGAucCCGUCGAUg -3'
miRNA:   3'- -UUGG--AGCUUUG--------------GUCCUCU--GGCAGCUA- -5'
16404 3' -54.4 NC_004084.1 + 49626 0.69 0.547633
Target:  5'- aGAUCUCGucGCCGGGcu-CCGUCGAg -3'
miRNA:   3'- -UUGGAGCuuUGGUCCucuGGCAGCUa -5'
16404 3' -54.4 NC_004084.1 + 22202 0.7 0.526035
Target:  5'- -cCCUCGAggaGACCGGaGAGguuccccgccucGCCGUCGAa -3'
miRNA:   3'- uuGGAGCU---UUGGUC-CUC------------UGGCAGCUa -5'
16404 3' -54.4 NC_004084.1 + 8620 0.71 0.443407
Target:  5'- -uCCUCGAGGCCGaucuGGCCGUCGAc -3'
miRNA:   3'- uuGGAGCUUUGGUccu-CUGGCAGCUa -5'
16404 3' -54.4 NC_004084.1 + 56922 0.73 0.368595
Target:  5'- cGAgCUCGAGggcgacgucuACCAGGAGGUCGUCGAUc -3'
miRNA:   3'- -UUgGAGCUU----------UGGUCCUCUGGCAGCUA- -5'
16404 3' -54.4 NC_004084.1 + 49415 0.73 0.351293
Target:  5'- -uCCUCG-AACCAGGAGuccUCGUCGAa -3'
miRNA:   3'- uuGGAGCuUUGGUCCUCu--GGCAGCUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.