miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16404 5' -55.5 NC_004084.1 + 25401 0.66 0.707409
Target:  5'- cGAGCU---GCUCCUgaaCGgUGGUCUCc -3'
miRNA:   3'- aCUCGAugcUGAGGA---GCgACCAGAGc -5'
16404 5' -55.5 NC_004084.1 + 16598 0.67 0.685892
Target:  5'- gGAGCgGCGACUgCUgCGCUgaucGGUCUg- -3'
miRNA:   3'- aCUCGaUGCUGAgGA-GCGA----CCAGAgc -5'
16404 5' -55.5 NC_004084.1 + 24747 0.67 0.653261
Target:  5'- cGAGCguggaagACGAUUUgUCGCUGGcgaaCUCa -3'
miRNA:   3'- aCUCGa------UGCUGAGgAGCGACCa---GAGc -5'
16404 5' -55.5 NC_004084.1 + 56246 0.68 0.598619
Target:  5'- --cGUgACGACUCCcgUGCUGGUgUCGc -3'
miRNA:   3'- acuCGaUGCUGAGGa-GCGACCAgAGC- -5'
16404 5' -55.5 NC_004084.1 + 46477 0.75 0.261971
Target:  5'- -cAGCUcgauCGAgUCCUCGCUGGUCgCGa -3'
miRNA:   3'- acUCGAu---GCUgAGGAGCGACCAGaGC- -5'
16404 5' -55.5 NC_004084.1 + 18968 1.09 0.001006
Target:  5'- cUGAGCUACGACUCCUCGCUGGUCUCGa -3'
miRNA:   3'- -ACUCGAUGCUGAGGAGCGACCAGAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.