Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16404 | 5' | -55.5 | NC_004084.1 | + | 25401 | 0.66 | 0.707409 |
Target: 5'- cGAGCU---GCUCCUgaaCGgUGGUCUCc -3' miRNA: 3'- aCUCGAugcUGAGGA---GCgACCAGAGc -5' |
|||||||
16404 | 5' | -55.5 | NC_004084.1 | + | 16598 | 0.67 | 0.685892 |
Target: 5'- gGAGCgGCGACUgCUgCGCUgaucGGUCUg- -3' miRNA: 3'- aCUCGaUGCUGAgGA-GCGA----CCAGAgc -5' |
|||||||
16404 | 5' | -55.5 | NC_004084.1 | + | 24747 | 0.67 | 0.653261 |
Target: 5'- cGAGCguggaagACGAUUUgUCGCUGGcgaaCUCa -3' miRNA: 3'- aCUCGa------UGCUGAGgAGCGACCa---GAGc -5' |
|||||||
16404 | 5' | -55.5 | NC_004084.1 | + | 56246 | 0.68 | 0.598619 |
Target: 5'- --cGUgACGACUCCcgUGCUGGUgUCGc -3' miRNA: 3'- acuCGaUGCUGAGGa-GCGACCAgAGC- -5' |
|||||||
16404 | 5' | -55.5 | NC_004084.1 | + | 46477 | 0.75 | 0.261971 |
Target: 5'- -cAGCUcgauCGAgUCCUCGCUGGUCgCGa -3' miRNA: 3'- acUCGAu---GCUgAGGAGCGACCAGaGC- -5' |
|||||||
16404 | 5' | -55.5 | NC_004084.1 | + | 18968 | 1.09 | 0.001006 |
Target: 5'- cUGAGCUACGACUCCUCGCUGGUCUCGa -3' miRNA: 3'- -ACUCGAUGCUGAGGAGCGACCAGAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home