miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16405 3' -55.6 NC_004084.1 + 23070 0.66 0.77647
Target:  5'- gUCGcCGGCGAcgCGACGaGGUGGacGUCg -3'
miRNA:   3'- -AGCuGCUGCUa-GCUGC-CCGCUgaCAG- -5'
16405 3' -55.6 NC_004084.1 + 41645 0.66 0.77647
Target:  5'- aUCGACGuCGAguucaaaCGcCGGGCGAacaacGUCa -3'
miRNA:   3'- -AGCUGCuGCUa------GCuGCCCGCUga---CAG- -5'
16405 3' -55.6 NC_004084.1 + 50265 0.66 0.77647
Target:  5'- gUUGGCGGCGAgguccUCGACGucugccgaccaGGCGuCgGUCa -3'
miRNA:   3'- -AGCUGCUGCU-----AGCUGC-----------CCGCuGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 21773 0.66 0.77647
Target:  5'- aUCGGCGGC-AUCGACGucGG-GGCcGUCa -3'
miRNA:   3'- -AGCUGCUGcUAGCUGC--CCgCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 12130 0.66 0.77647
Target:  5'- gUCGACGACuacgacuccGUCGACGaaGCGAUggaUGUCg -3'
miRNA:   3'- -AGCUGCUGc--------UAGCUGCc-CGCUG---ACAG- -5'
16405 3' -55.6 NC_004084.1 + 12368 0.66 0.77647
Target:  5'- gUGGCGACGAagCGGaaGGCGAggGUCc -3'
miRNA:   3'- aGCUGCUGCUa-GCUgcCCGCUgaCAG- -5'
16405 3' -55.6 NC_004084.1 + 38910 0.66 0.77647
Target:  5'- aUGGCGAUGAcUCGACGacCGACUGg- -3'
miRNA:   3'- aGCUGCUGCU-AGCUGCccGCUGACag -5'
16405 3' -55.6 NC_004084.1 + 48364 0.66 0.766594
Target:  5'- aCGACGuACGAUCGACc-GUGAUagGUCa -3'
miRNA:   3'- aGCUGC-UGCUAGCUGccCGCUGa-CAG- -5'
16405 3' -55.6 NC_004084.1 + 27287 0.66 0.766594
Target:  5'- cCGcUGACGAUCG-CGGcGCcGCUGUUc -3'
miRNA:   3'- aGCuGCUGCUAGCuGCC-CGcUGACAG- -5'
16405 3' -55.6 NC_004084.1 + 9996 0.66 0.763605
Target:  5'- cCGACGACG-UCGACGaagaucuccgagauGGCGGCc--- -3'
miRNA:   3'- aGCUGCUGCuAGCUGC--------------CCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 34794 0.66 0.756586
Target:  5'- -gGAUGACGccUCGACGGGCcuGACgcuUCg -3'
miRNA:   3'- agCUGCUGCu-AGCUGCCCG--CUGac-AG- -5'
16405 3' -55.6 NC_004084.1 + 29224 0.66 0.756586
Target:  5'- gUCGACGuuGuUCG-CGGGCGAguaCUcGUCg -3'
miRNA:   3'- -AGCUGCugCuAGCuGCCCGCU---GA-CAG- -5'
16405 3' -55.6 NC_004084.1 + 23716 0.66 0.756586
Target:  5'- -aGACGGCGAUgGACGcGGUGAg---- -3'
miRNA:   3'- agCUGCUGCUAgCUGC-CCGCUgacag -5'
16405 3' -55.6 NC_004084.1 + 8214 0.66 0.756586
Target:  5'- aCGACGgcuucaucACGGUUGcagaGGGCGAC-GUCg -3'
miRNA:   3'- aGCUGC--------UGCUAGCug--CCCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 10533 0.66 0.756586
Target:  5'- gUCGACGuugccgagccaGCGGaCGAguagcucgGGGUGGCUGUCg -3'
miRNA:   3'- -AGCUGC-----------UGCUaGCUg-------CCCGCUGACAG- -5'
16405 3' -55.6 NC_004084.1 + 49245 0.66 0.756586
Target:  5'- gCGAUGACugaagaGAUCGACGuccacgucacGGCGACggcgaaGUCg -3'
miRNA:   3'- aGCUGCUG------CUAGCUGC----------CCGCUGa-----CAG- -5'
16405 3' -55.6 NC_004084.1 + 51426 0.66 0.75356
Target:  5'- uUCGAgGGCGAcacgcugaucuacgUUGGCGagggccgcGGCGGCUGUa -3'
miRNA:   3'- -AGCUgCUGCU--------------AGCUGC--------CCGCUGACAg -5'
16405 3' -55.6 NC_004084.1 + 45988 0.66 0.746457
Target:  5'- gUCGACG-CGAUCaugGACGGcGagaaGACgGUCa -3'
miRNA:   3'- -AGCUGCuGCUAG---CUGCC-Cg---CUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 39833 0.66 0.746457
Target:  5'- aUGAUGGCGcucgaguccAUCGGCGGccGCGGCgccGUCg -3'
miRNA:   3'- aGCUGCUGC---------UAGCUGCC--CGCUGa--CAG- -5'
16405 3' -55.6 NC_004084.1 + 29690 0.66 0.746457
Target:  5'- gCGACG-CGGUCG-CGGaCG-CUGUCc -3'
miRNA:   3'- aGCUGCuGCUAGCuGCCcGCuGACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.