miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16405 3' -55.6 NC_004084.1 + 39784 0.7 0.523825
Target:  5'- aCGGCGACGAggUCGGCcaacucGGCGACU-UCg -3'
miRNA:   3'- aGCUGCUGCU--AGCUGc-----CCGCUGAcAG- -5'
16405 3' -55.6 NC_004084.1 + 15552 0.7 0.523825
Target:  5'- -gGACGACG-UCGACGGGUcg--GUCg -3'
miRNA:   3'- agCUGCUGCuAGCUGCCCGcugaCAG- -5'
16405 3' -55.6 NC_004084.1 + 3061 0.7 0.523825
Target:  5'- cUCGAgGAacucGUCGACGGGCcGCUcGUCg -3'
miRNA:   3'- -AGCUgCUgc--UAGCUGCCCGcUGA-CAG- -5'
16405 3' -55.6 NC_004084.1 + 32379 0.69 0.544662
Target:  5'- -aGACGACGAUCGAgcuCGGGCucgaaGGCUa-- -3'
miRNA:   3'- agCUGCUGCUAGCU---GCCCG-----CUGAcag -5'
16405 3' -55.6 NC_004084.1 + 55255 0.69 0.565761
Target:  5'- gUCGACGACGucuacgGUCGGCG-GCGugUagaucGUCa -3'
miRNA:   3'- -AGCUGCUGC------UAGCUGCcCGCugA-----CAG- -5'
16405 3' -55.6 NC_004084.1 + 19923 0.69 0.565761
Target:  5'- cUCG-CGACGAUCGA-GGGCGAg---- -3'
miRNA:   3'- -AGCuGCUGCUAGCUgCCCGCUgacag -5'
16405 3' -55.6 NC_004084.1 + 27482 0.69 0.587066
Target:  5'- cUCGAgcuCGACG-UCGACGaGGCGAUcgacGUCu -3'
miRNA:   3'- -AGCU---GCUGCuAGCUGC-CCGCUGa---CAG- -5'
16405 3' -55.6 NC_004084.1 + 1225 0.69 0.587066
Target:  5'- cUCGGCGGCGGgaUCGA-GGGCGAUc--- -3'
miRNA:   3'- -AGCUGCUGCU--AGCUgCCCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 49079 0.69 0.587066
Target:  5'- aCGuGCGACGGUCGGgagaggucuCGcGUGACUGUCu -3'
miRNA:   3'- aGC-UGCUGCUAGCU---------GCcCGCUGACAG- -5'
16405 3' -55.6 NC_004084.1 + 49333 0.69 0.597777
Target:  5'- cUCGAuauCGGCGAUCGuguCGaGGUGAUcGUCg -3'
miRNA:   3'- -AGCU---GCUGCUAGCu--GC-CCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 30574 0.69 0.597777
Target:  5'- gCGGCGACGGUCGGCgaaccggagcgGGGUGAg-GUg -3'
miRNA:   3'- aGCUGCUGCUAGCUG-----------CCCGCUgaCAg -5'
16405 3' -55.6 NC_004084.1 + 213 0.68 0.608515
Target:  5'- cCGcACGGCcAUCGGCGGGgGAgUcGUCg -3'
miRNA:   3'- aGC-UGCUGcUAGCUGCCCgCUgA-CAG- -5'
16405 3' -55.6 NC_004084.1 + 16122 0.68 0.608515
Target:  5'- aUCGuCGcCGAUCGugaACGGGUGACcgcggugGUCg -3'
miRNA:   3'- -AGCuGCuGCUAGC---UGCCCGCUGa------CAG- -5'
16405 3' -55.6 NC_004084.1 + 55968 0.68 0.619274
Target:  5'- aCGACGGCGA-CG-CGGaGgGGCUGaUCg -3'
miRNA:   3'- aGCUGCUGCUaGCuGCC-CgCUGAC-AG- -5'
16405 3' -55.6 NC_004084.1 + 54063 0.68 0.619274
Target:  5'- aCGcGCGACGAggaGACGGGCGAg---- -3'
miRNA:   3'- aGC-UGCUGCUag-CUGCCCGCUgacag -5'
16405 3' -55.6 NC_004084.1 + 7397 0.68 0.630042
Target:  5'- aUCGACGagcugagcaagGCGAUCGACgacgaGGGCGAUg--- -3'
miRNA:   3'- -AGCUGC-----------UGCUAGCUG-----CCCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 56444 0.68 0.640813
Target:  5'- gCGaACGACGAucUCGACGGcGCG-CUcUCg -3'
miRNA:   3'- aGC-UGCUGCU--AGCUGCC-CGCuGAcAG- -5'
16405 3' -55.6 NC_004084.1 + 17155 0.68 0.640813
Target:  5'- aUGGgGACGAUCG-CcGGCGAC-GUCg -3'
miRNA:   3'- aGCUgCUGCUAGCuGcCCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 33385 0.68 0.6505
Target:  5'- aUCGGauGCGAUCuccucugGAuCGGGCGGCUGcUCg -3'
miRNA:   3'- -AGCUgcUGCUAG-------CU-GCCCGCUGAC-AG- -5'
16405 3' -55.6 NC_004084.1 + 1026 0.68 0.6505
Target:  5'- gUCGACG-CGAUCGG-GGGCGcGCUcgaguucgccgagGUCg -3'
miRNA:   3'- -AGCUGCuGCUAGCUgCCCGC-UGA-------------CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.