Results 81 - 86 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 23070 | 0.66 | 0.77647 |
Target: 5'- gUCGcCGGCGAcgCGACGaGGUGGacGUCg -3' miRNA: 3'- -AGCuGCUGCUa-GCUGC-CCGCUgaCAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 38910 | 0.66 | 0.77647 |
Target: 5'- aUGGCGAUGAcUCGACGacCGACUGg- -3' miRNA: 3'- aGCUGCUGCU-AGCUGCccGCUGACag -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 41645 | 0.66 | 0.77647 |
Target: 5'- aUCGACGuCGAguucaaaCGcCGGGCGAacaacGUCa -3' miRNA: 3'- -AGCUGCuGCUa------GCuGCCCGCUga---CAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 12130 | 0.66 | 0.77647 |
Target: 5'- gUCGACGACuacgacuccGUCGACGaaGCGAUggaUGUCg -3' miRNA: 3'- -AGCUGCUGc--------UAGCUGCc-CGCUG---ACAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 12368 | 0.66 | 0.77647 |
Target: 5'- gUGGCGACGAagCGGaaGGCGAggGUCc -3' miRNA: 3'- aGCUGCUGCUa-GCUgcCCGCUgaCAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 50265 | 0.66 | 0.77647 |
Target: 5'- gUUGGCGGCGAgguccUCGACGucugccgaccaGGCGuCgGUCa -3' miRNA: 3'- -AGCUGCUGCU-----AGCUGC-----------CCGCuGaCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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