miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16405 3' -55.6 NC_004084.1 + 39833 0.66 0.746457
Target:  5'- aUGAUGGCGcucgaguccAUCGGCGGccGCGGCgccGUCg -3'
miRNA:   3'- aGCUGCUGC---------UAGCUGCC--CGCUGa--CAG- -5'
16405 3' -55.6 NC_004084.1 + 4818 0.66 0.746457
Target:  5'- -aGGCGGgccgGAUCGGCGGG-GAgaGUCa -3'
miRNA:   3'- agCUGCUg---CUAGCUGCCCgCUgaCAG- -5'
16405 3' -55.6 NC_004084.1 + 9029 0.66 0.736216
Target:  5'- aCGACGAcuacgaauccCGcAUCGAgcggguagaguCGGGCGAC-GUCg -3'
miRNA:   3'- aGCUGCU----------GC-UAGCU-----------GCCCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 29723 0.66 0.736216
Target:  5'- uUCGAgGA-GAUCGucCGGGCGACcGg- -3'
miRNA:   3'- -AGCUgCUgCUAGCu-GCCCGCUGaCag -5'
16405 3' -55.6 NC_004084.1 + 16920 0.66 0.735186
Target:  5'- aUCGugGcCGGgugcgguucggcaUCGGCGGGCGucGCgacGUCg -3'
miRNA:   3'- -AGCugCuGCU-------------AGCUGCCCGC--UGa--CAG- -5'
16405 3' -55.6 NC_004084.1 + 28283 0.67 0.715444
Target:  5'- cUCGugGACGGgagucucgCGAUcgGGGCGGCgaGUa -3'
miRNA:   3'- -AGCugCUGCUa-------GCUG--CCCGCUGa-CAg -5'
16405 3' -55.6 NC_004084.1 + 20502 0.67 0.715444
Target:  5'- cCGACGACGAcaucacgaUCGACGaagagaccgaGGUGACUa-- -3'
miRNA:   3'- aGCUGCUGCU--------AGCUGC----------CCGCUGAcag -5'
16405 3' -55.6 NC_004084.1 + 8964 0.67 0.715444
Target:  5'- gCGGCGACGAagaCGGCGGGaCGAg---- -3'
miRNA:   3'- aGCUGCUGCUa--GCUGCCC-GCUgacag -5'
16405 3' -55.6 NC_004084.1 + 803 0.67 0.712299
Target:  5'- cUCGA-GACGAagcgcgaacUCcucaacccguucgaGACGGGCGACUGg- -3'
miRNA:   3'- -AGCUgCUGCU---------AG--------------CUGCCCGCUGACag -5'
16405 3' -55.6 NC_004084.1 + 24048 0.67 0.704935
Target:  5'- -aGACGGCGAUgGACGcgguuGCGGC-GUCc -3'
miRNA:   3'- agCUGCUGCUAgCUGCc----CGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 41369 0.67 0.694358
Target:  5'- gCGACGucagucacCGcAUCGACGGGCgcaGACgcucgGUCg -3'
miRNA:   3'- aGCUGCu-------GC-UAGCUGCCCG---CUGa----CAG- -5'
16405 3' -55.6 NC_004084.1 + 56914 0.67 0.694358
Target:  5'- aUCGGCuuCGAgcUCGA-GGGCGAC-GUCu -3'
miRNA:   3'- -AGCUGcuGCU--AGCUgCCCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 13836 0.67 0.694358
Target:  5'- -aGACGAUGGUCu-CGGGUGACgagCa -3'
miRNA:   3'- agCUGCUGCUAGcuGCCCGCUGacaG- -5'
16405 3' -55.6 NC_004084.1 + 39721 0.67 0.694358
Target:  5'- gCGACGACGccGUCGACGaGGaUGACg--- -3'
miRNA:   3'- aGCUGCUGC--UAGCUGC-CC-GCUGacag -5'
16405 3' -55.6 NC_004084.1 + 42552 0.67 0.694358
Target:  5'- aUCGAcuguccaccCGACGAUgGAUGGGgCGAgCUGcCa -3'
miRNA:   3'- -AGCU---------GCUGCUAgCUGCCC-GCU-GACaG- -5'
16405 3' -55.6 NC_004084.1 + 48714 0.67 0.691173
Target:  5'- aUCGGCGucggccaacucaccGCGGUcucCGGCGGGCcaccCUGUCa -3'
miRNA:   3'- -AGCUGC--------------UGCUA---GCUGCCCGcu--GACAG- -5'
16405 3' -55.6 NC_004084.1 + 2319 0.67 0.691173
Target:  5'- gUCGACGAgGA-CGAUGacgaggagaguacaGGCGGCgGUCu -3'
miRNA:   3'- -AGCUGCUgCUaGCUGC--------------CCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 37861 0.67 0.683723
Target:  5'- uUCGaACGG-GAUgGcCGGGCGGgUGUCg -3'
miRNA:   3'- -AGC-UGCUgCUAgCuGCCCGCUgACAG- -5'
16405 3' -55.6 NC_004084.1 + 5184 0.67 0.673041
Target:  5'- aUCGACGACuGGguaGACGaGGCGGCa--- -3'
miRNA:   3'- -AGCUGCUG-CUag-CUGC-CCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 11666 0.67 0.673041
Target:  5'- gUCGGCGACGAcuaCGGCGaggacaGCGAC-GUCu -3'
miRNA:   3'- -AGCUGCUGCUa--GCUGCc-----CGCUGaCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.