Results 41 - 60 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 9129 | 0.67 | 0.673041 |
Target: 5'- cUCGAuCGGCGucCGuCGGGCGGaaGUCg -3' miRNA: 3'- -AGCU-GCUGCuaGCuGCCCGCUgaCAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 7461 | 0.67 | 0.673041 |
Target: 5'- cCGACGGCGAcUCGAgcGGCGACg--- -3' miRNA: 3'- aGCUGCUGCU-AGCUgcCCGCUGacag -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 11666 | 0.67 | 0.673041 |
Target: 5'- gUCGGCGACGAcuaCGGCGaggacaGCGAC-GUCu -3' miRNA: 3'- -AGCUGCUGCUa--GCUGCc-----CGCUGaCAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 5184 | 0.67 | 0.673041 |
Target: 5'- aUCGACGACuGGguaGACGaGGCGGCa--- -3' miRNA: 3'- -AGCUGCUG-CUag-CUGC-CCGCUGacag -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 11047 | 0.67 | 0.662322 |
Target: 5'- gUCGACGACGcggaCGAagGGGCGGCcGcCg -3' miRNA: 3'- -AGCUGCUGCua--GCUg-CCCGCUGaCaG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 18020 | 0.67 | 0.662322 |
Target: 5'- gUCGACGGCGAgugUGAUGuGGUccgaGACcaUGUCg -3' miRNA: 3'- -AGCUGCUGCUa--GCUGC-CCG----CUG--ACAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 1026 | 0.68 | 0.6505 |
Target: 5'- gUCGACG-CGAUCGG-GGGCGcGCUcgaguucgccgagGUCg -3' miRNA: 3'- -AGCUGCuGCUAGCUgCCCGC-UGA-------------CAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 33385 | 0.68 | 0.6505 |
Target: 5'- aUCGGauGCGAUCuccucugGAuCGGGCGGCUGcUCg -3' miRNA: 3'- -AGCUgcUGCUAG-------CU-GCCCGCUGAC-AG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 56444 | 0.68 | 0.640813 |
Target: 5'- gCGaACGACGAucUCGACGGcGCG-CUcUCg -3' miRNA: 3'- aGC-UGCUGCU--AGCUGCC-CGCuGAcAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 17155 | 0.68 | 0.640813 |
Target: 5'- aUGGgGACGAUCG-CcGGCGAC-GUCg -3' miRNA: 3'- aGCUgCUGCUAGCuGcCCGCUGaCAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 7397 | 0.68 | 0.630042 |
Target: 5'- aUCGACGagcugagcaagGCGAUCGACgacgaGGGCGAUg--- -3' miRNA: 3'- -AGCUGC-----------UGCUAGCUG-----CCCGCUGacag -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 54063 | 0.68 | 0.619274 |
Target: 5'- aCGcGCGACGAggaGACGGGCGAg---- -3' miRNA: 3'- aGC-UGCUGCUag-CUGCCCGCUgacag -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 55968 | 0.68 | 0.619274 |
Target: 5'- aCGACGGCGA-CG-CGGaGgGGCUGaUCg -3' miRNA: 3'- aGCUGCUGCUaGCuGCC-CgCUGAC-AG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 16122 | 0.68 | 0.608515 |
Target: 5'- aUCGuCGcCGAUCGugaACGGGUGACcgcggugGUCg -3' miRNA: 3'- -AGCuGCuGCUAGC---UGCCCGCUGa------CAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 213 | 0.68 | 0.608515 |
Target: 5'- cCGcACGGCcAUCGGCGGGgGAgUcGUCg -3' miRNA: 3'- aGC-UGCUGcUAGCUGCCCgCUgA-CAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 49333 | 0.69 | 0.597777 |
Target: 5'- cUCGAuauCGGCGAUCGuguCGaGGUGAUcGUCg -3' miRNA: 3'- -AGCU---GCUGCUAGCu--GC-CCGCUGaCAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 30574 | 0.69 | 0.597777 |
Target: 5'- gCGGCGACGGUCGGCgaaccggagcgGGGUGAg-GUg -3' miRNA: 3'- aGCUGCUGCUAGCUG-----------CCCGCUgaCAg -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 49079 | 0.69 | 0.587066 |
Target: 5'- aCGuGCGACGGUCGGgagaggucuCGcGUGACUGUCu -3' miRNA: 3'- aGC-UGCUGCUAGCU---------GCcCGCUGACAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 1225 | 0.69 | 0.587066 |
Target: 5'- cUCGGCGGCGGgaUCGA-GGGCGAUc--- -3' miRNA: 3'- -AGCUGCUGCU--AGCUgCCCGCUGacag -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 27482 | 0.69 | 0.587066 |
Target: 5'- cUCGAgcuCGACG-UCGACGaGGCGAUcgacGUCu -3' miRNA: 3'- -AGCU---GCUGCuAGCUGC-CCGCUGa---CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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