miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16405 3' -55.6 NC_004084.1 + 213 0.68 0.608515
Target:  5'- cCGcACGGCcAUCGGCGGGgGAgUcGUCg -3'
miRNA:   3'- aGC-UGCUGcUAGCUGCCCgCUgA-CAG- -5'
16405 3' -55.6 NC_004084.1 + 653 0.67 0.673041
Target:  5'- cUCGACGGCG-UCGugGuaGGUGuggaUGUCg -3'
miRNA:   3'- -AGCUGCUGCuAGCugC--CCGCug--ACAG- -5'
16405 3' -55.6 NC_004084.1 + 803 0.67 0.712299
Target:  5'- cUCGA-GACGAagcgcgaacUCcucaacccguucgaGACGGGCGACUGg- -3'
miRNA:   3'- -AGCUgCUGCU---------AG--------------CUGCCCGCUGACag -5'
16405 3' -55.6 NC_004084.1 + 1026 0.68 0.6505
Target:  5'- gUCGACG-CGAUCGG-GGGCGcGCUcgaguucgccgagGUCg -3'
miRNA:   3'- -AGCUGCuGCUAGCUgCCCGC-UGA-------------CAG- -5'
16405 3' -55.6 NC_004084.1 + 1225 0.69 0.587066
Target:  5'- cUCGGCGGCGGgaUCGA-GGGCGAUc--- -3'
miRNA:   3'- -AGCUGCUGCU--AGCUgCCCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 2319 0.67 0.691173
Target:  5'- gUCGACGAgGA-CGAUGacgaggagaguacaGGCGGCgGUCu -3'
miRNA:   3'- -AGCUGCUgCUaGCUGC--------------CCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 3061 0.7 0.523825
Target:  5'- cUCGAgGAacucGUCGACGGGCcGCUcGUCg -3'
miRNA:   3'- -AGCUgCUgc--UAGCUGCCCGcUGA-CAG- -5'
16405 3' -55.6 NC_004084.1 + 4818 0.66 0.746457
Target:  5'- -aGGCGGgccgGAUCGGCGGG-GAgaGUCa -3'
miRNA:   3'- agCUGCUg---CUAGCUGCCCgCUgaCAG- -5'
16405 3' -55.6 NC_004084.1 + 5184 0.67 0.673041
Target:  5'- aUCGACGACuGGguaGACGaGGCGGCa--- -3'
miRNA:   3'- -AGCUGCUG-CUag-CUGC-CCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 6065 0.74 0.307502
Target:  5'- aUCGAUGGCGAagaauUCGAggaGGGUGACUGg- -3'
miRNA:   3'- -AGCUGCUGCU-----AGCUg--CCCGCUGACag -5'
16405 3' -55.6 NC_004084.1 + 6597 0.71 0.46336
Target:  5'- gUGGCGACaGUCGGCGGGCG-CggagGUa -3'
miRNA:   3'- aGCUGCUGcUAGCUGCCCGCuGa---CAg -5'
16405 3' -55.6 NC_004084.1 + 7082 0.67 0.673041
Target:  5'- gUCGACGAaGAUCucGCGGGCGcACUcgaucgccucgGUCg -3'
miRNA:   3'- -AGCUGCUgCUAGc-UGCCCGC-UGA-----------CAG- -5'
16405 3' -55.6 NC_004084.1 + 7236 0.75 0.29216
Target:  5'- cCGAccuCGACGAUCGGCGcgugcucGGCGACcGUCu -3'
miRNA:   3'- aGCU---GCUGCUAGCUGC-------CCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 7397 0.68 0.630042
Target:  5'- aUCGACGagcugagcaagGCGAUCGACgacgaGGGCGAUg--- -3'
miRNA:   3'- -AGCUGC-----------UGCUAGCUG-----CCCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 7461 0.67 0.673041
Target:  5'- cCGACGGCGAcUCGAgcGGCGACg--- -3'
miRNA:   3'- aGCUGCUGCU-AGCUgcCCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 8214 0.66 0.756586
Target:  5'- aCGACGgcuucaucACGGUUGcagaGGGCGAC-GUCg -3'
miRNA:   3'- aGCUGC--------UGCUAGCug--CCCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 8964 0.67 0.715444
Target:  5'- gCGGCGACGAagaCGGCGGGaCGAg---- -3'
miRNA:   3'- aGCUGCUGCUa--GCUGCCC-GCUgacag -5'
16405 3' -55.6 NC_004084.1 + 9029 0.66 0.736216
Target:  5'- aCGACGAcuacgaauccCGcAUCGAgcggguagaguCGGGCGAC-GUCg -3'
miRNA:   3'- aGCUGCU----------GC-UAGCU-----------GCCCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 9129 0.67 0.673041
Target:  5'- cUCGAuCGGCGucCGuCGGGCGGaaGUCg -3'
miRNA:   3'- -AGCU-GCUGCuaGCuGCCCGCUgaCAG- -5'
16405 3' -55.6 NC_004084.1 + 9996 0.66 0.763605
Target:  5'- cCGACGACG-UCGACGaagaucuccgagauGGCGGCc--- -3'
miRNA:   3'- aGCUGCUGCuAGCUGC--------------CCGCUGacag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.