miRNA display CGI


Results 21 - 40 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16405 3' -55.6 NC_004084.1 + 10533 0.66 0.756586
Target:  5'- gUCGACGuugccgagccaGCGGaCGAguagcucgGGGUGGCUGUCg -3'
miRNA:   3'- -AGCUGC-----------UGCUaGCUg-------CCCGCUGACAG- -5'
16405 3' -55.6 NC_004084.1 + 11047 0.67 0.662322
Target:  5'- gUCGACGACGcggaCGAagGGGCGGCcGcCg -3'
miRNA:   3'- -AGCUGCUGCua--GCUg-CCCGCUGaCaG- -5'
16405 3' -55.6 NC_004084.1 + 11666 0.67 0.673041
Target:  5'- gUCGGCGACGAcuaCGGCGaggacaGCGAC-GUCu -3'
miRNA:   3'- -AGCUGCUGCUa--GCUGCc-----CGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 12130 0.66 0.77647
Target:  5'- gUCGACGACuacgacuccGUCGACGaaGCGAUggaUGUCg -3'
miRNA:   3'- -AGCUGCUGc--------UAGCUGCc-CGCUG---ACAG- -5'
16405 3' -55.6 NC_004084.1 + 12368 0.66 0.77647
Target:  5'- gUGGCGACGAagCGGaaGGCGAggGUCc -3'
miRNA:   3'- aGCUGCUGCUa-GCUgcCCGCUgaCAG- -5'
16405 3' -55.6 NC_004084.1 + 12962 0.75 0.28577
Target:  5'- cUCGGCuuCGAUCcGCGGGCGGC-GUCa -3'
miRNA:   3'- -AGCUGcuGCUAGcUGCCCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 13836 0.67 0.694358
Target:  5'- -aGACGAUGGUCu-CGGGUGACgagCa -3'
miRNA:   3'- agCUGCUGCUAGcuGCCCGCUGacaG- -5'
16405 3' -55.6 NC_004084.1 + 15552 0.7 0.523825
Target:  5'- -gGACGACG-UCGACGGGUcg--GUCg -3'
miRNA:   3'- agCUGCUGCuAGCUGCCCGcugaCAG- -5'
16405 3' -55.6 NC_004084.1 + 16122 0.68 0.608515
Target:  5'- aUCGuCGcCGAUCGugaACGGGUGACcgcggugGUCg -3'
miRNA:   3'- -AGCuGCuGCUAGC---UGCCCGCUGa------CAG- -5'
16405 3' -55.6 NC_004084.1 + 16920 0.66 0.735186
Target:  5'- aUCGugGcCGGgugcgguucggcaUCGGCGGGCGucGCgacGUCg -3'
miRNA:   3'- -AGCugCuGCU-------------AGCUGCCCGC--UGa--CAG- -5'
16405 3' -55.6 NC_004084.1 + 17155 0.68 0.640813
Target:  5'- aUGGgGACGAUCG-CcGGCGAC-GUCg -3'
miRNA:   3'- aGCUgCUGCUAGCuGcCCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 17970 0.73 0.363032
Target:  5'- aUGACGGCGGaaUCGuCGGcGCG-CUGUCg -3'
miRNA:   3'- aGCUGCUGCU--AGCuGCC-CGCuGACAG- -5'
16405 3' -55.6 NC_004084.1 + 18020 0.67 0.662322
Target:  5'- gUCGACGGCGAgugUGAUGuGGUccgaGACcaUGUCg -3'
miRNA:   3'- -AGCUGCUGCUa--GCUGC-CCG----CUG--ACAG- -5'
16405 3' -55.6 NC_004084.1 + 19315 1.1 0.001115
Target:  5'- gUCGACGACGAUCGACGGGCGACUGUCu -3'
miRNA:   3'- -AGCUGCUGCUAGCUGCCCGCUGACAG- -5'
16405 3' -55.6 NC_004084.1 + 19923 0.69 0.565761
Target:  5'- cUCG-CGACGAUCGA-GGGCGAg---- -3'
miRNA:   3'- -AGCuGCUGCUAGCUgCCCGCUgacag -5'
16405 3' -55.6 NC_004084.1 + 20502 0.67 0.715444
Target:  5'- cCGACGACGAcaucacgaUCGACGaagagaccgaGGUGACUa-- -3'
miRNA:   3'- aGCUGCUGCU--------AGCUGC----------CCGCUGAcag -5'
16405 3' -55.6 NC_004084.1 + 21709 0.71 0.46336
Target:  5'- gUCGGCGACcGUCGACGagauccGCGAC-GUCa -3'
miRNA:   3'- -AGCUGCUGcUAGCUGCc-----CGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 21773 0.66 0.77647
Target:  5'- aUCGGCGGC-AUCGACGucGG-GGCcGUCa -3'
miRNA:   3'- -AGCUGCUGcUAGCUGC--CCgCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 23070 0.66 0.77647
Target:  5'- gUCGcCGGCGAcgCGACGaGGUGGacGUCg -3'
miRNA:   3'- -AGCuGCUGCUa-GCUGC-CCGCUgaCAG- -5'
16405 3' -55.6 NC_004084.1 + 23716 0.66 0.756586
Target:  5'- -aGACGGCGAUgGACGcGGUGAg---- -3'
miRNA:   3'- agCUGCUGCUAgCUGC-CCGCUgacag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.