miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16405 3' -55.6 NC_004084.1 + 24048 0.67 0.704935
Target:  5'- -aGACGGCGAUgGACGcgguuGCGGC-GUCc -3'
miRNA:   3'- agCUGCUGCUAgCUGCc----CGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 25450 0.71 0.457512
Target:  5'- gUGAUGACGAacguggcuucgagguUCG-CGGGCGGC-GUCa -3'
miRNA:   3'- aGCUGCUGCU---------------AGCuGCCCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 27287 0.66 0.766594
Target:  5'- cCGcUGACGAUCG-CGGcGCcGCUGUUc -3'
miRNA:   3'- aGCuGCUGCUAGCuGCC-CGcUGACAG- -5'
16405 3' -55.6 NC_004084.1 + 27482 0.69 0.587066
Target:  5'- cUCGAgcuCGACG-UCGACGaGGCGAUcgacGUCu -3'
miRNA:   3'- -AGCU---GCUGCuAGCUGC-CCGCUGa---CAG- -5'
16405 3' -55.6 NC_004084.1 + 28283 0.67 0.715444
Target:  5'- cUCGugGACGGgagucucgCGAUcgGGGCGGCgaGUa -3'
miRNA:   3'- -AGCugCUGCUa-------GCUG--CCCGCUGa-CAg -5'
16405 3' -55.6 NC_004084.1 + 29224 0.66 0.756586
Target:  5'- gUCGACGuuGuUCG-CGGGCGAguaCUcGUCg -3'
miRNA:   3'- -AGCUGCugCuAGCuGCCCGCU---GA-CAG- -5'
16405 3' -55.6 NC_004084.1 + 29432 0.71 0.432638
Target:  5'- gUCGACGGCGAgcuucaccgcgaacgCGGCguGGGCGcgaugcccaucgacGCUGUCg -3'
miRNA:   3'- -AGCUGCUGCUa--------------GCUG--CCCGC--------------UGACAG- -5'
16405 3' -55.6 NC_004084.1 + 29690 0.66 0.746457
Target:  5'- gCGACG-CGGUCG-CGGaCG-CUGUCc -3'
miRNA:   3'- aGCUGCuGCUAGCuGCCcGCuGACAG- -5'
16405 3' -55.6 NC_004084.1 + 29723 0.66 0.736216
Target:  5'- uUCGAgGA-GAUCGucCGGGCGACcGg- -3'
miRNA:   3'- -AGCUgCUgCUAGCu-GCCCGCUGaCag -5'
16405 3' -55.6 NC_004084.1 + 30411 0.71 0.453635
Target:  5'- -aGcCGACG-UCGACGGGCGGCg--- -3'
miRNA:   3'- agCuGCUGCuAGCUGCCCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 30574 0.69 0.597777
Target:  5'- gCGGCGACGGUCGGCgaaccggagcgGGGUGAg-GUg -3'
miRNA:   3'- aGCUGCUGCUAGCUG-----------CCCGCUgaCAg -5'
16405 3' -55.6 NC_004084.1 + 32379 0.69 0.544662
Target:  5'- -aGACGACGAUCGAgcuCGGGCucgaaGGCUa-- -3'
miRNA:   3'- agCUGCUGCUAGCU---GCCCG-----CUGAcag -5'
16405 3' -55.6 NC_004084.1 + 33385 0.68 0.6505
Target:  5'- aUCGGauGCGAUCuccucugGAuCGGGCGGCUGcUCg -3'
miRNA:   3'- -AGCUgcUGCUAG-------CU-GCCCGCUGAC-AG- -5'
16405 3' -55.6 NC_004084.1 + 33450 0.76 0.252273
Target:  5'- -aGGCGAUGAUgGGCuGGGCGaaGCUGUCc -3'
miRNA:   3'- agCUGCUGCUAgCUG-CCCGC--UGACAG- -5'
16405 3' -55.6 NC_004084.1 + 34794 0.66 0.756586
Target:  5'- -gGAUGACGccUCGACGGGCcuGACgcuUCg -3'
miRNA:   3'- agCUGCUGCu-AGCUGCCCG--CUGac-AG- -5'
16405 3' -55.6 NC_004084.1 + 37861 0.67 0.683723
Target:  5'- uUCGaACGG-GAUgGcCGGGCGGgUGUCg -3'
miRNA:   3'- -AGC-UGCUgCUAgCuGCCCGCUgACAG- -5'
16405 3' -55.6 NC_004084.1 + 38910 0.66 0.77647
Target:  5'- aUGGCGAUGAcUCGACGacCGACUGg- -3'
miRNA:   3'- aGCUGCUGCU-AGCUGCccGCUGACag -5'
16405 3' -55.6 NC_004084.1 + 39585 0.66 0.746457
Target:  5'- gUCGACGA-GGUCc-CGGGCGcGCUuGUCu -3'
miRNA:   3'- -AGCUGCUgCUAGcuGCCCGC-UGA-CAG- -5'
16405 3' -55.6 NC_004084.1 + 39721 0.67 0.694358
Target:  5'- gCGACGACGccGUCGACGaGGaUGACg--- -3'
miRNA:   3'- aGCUGCUGC--UAGCUGC-CC-GCUGacag -5'
16405 3' -55.6 NC_004084.1 + 39784 0.7 0.523825
Target:  5'- aCGGCGACGAggUCGGCcaacucGGCGACU-UCg -3'
miRNA:   3'- aGCUGCUGCU--AGCUGc-----CCGCUGAcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.