Results 21 - 40 of 86 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 42308 | 0.72 | 0.425144 |
Target: 5'- aUCGGCGACGAUCG-CGa-CGACcGUCg -3' miRNA: 3'- -AGCUGCUGCUAGCuGCccGCUGaCAG- -5' |
|||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 41645 | 0.66 | 0.77647 |
Target: 5'- aUCGACGuCGAguucaaaCGcCGGGCGAacaacGUCa -3' miRNA: 3'- -AGCUGCuGCUa------GCuGCCCGCUga---CAG- -5' |
|||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 41612 | 0.71 | 0.453635 |
Target: 5'- gUCGAgGACGAaCG-CGaGGCGACgGUCc -3' miRNA: 3'- -AGCUgCUGCUaGCuGC-CCGCUGaCAG- -5' |
|||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 41369 | 0.67 | 0.694358 |
Target: 5'- gCGACGucagucacCGcAUCGACGGGCgcaGACgcucgGUCg -3' miRNA: 3'- aGCUGCu-------GC-UAGCUGCCCG---CUGa----CAG- -5' |
|||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 40553 | 0.7 | 0.513519 |
Target: 5'- -gGACaugagcaaaGCGAUCGauGCGGGCGACgagGUCa -3' miRNA: 3'- agCUGc--------UGCUAGC--UGCCCGCUGa--CAG- -5' |
|||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 39833 | 0.66 | 0.746457 |
Target: 5'- aUGAUGGCGcucgaguccAUCGGCGGccGCGGCgccGUCg -3' miRNA: 3'- aGCUGCUGC---------UAGCUGCC--CGCUGa--CAG- -5' |
|||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 39784 | 0.7 | 0.523825 |
Target: 5'- aCGGCGACGAggUCGGCcaacucGGCGACU-UCg -3' miRNA: 3'- aGCUGCUGCU--AGCUGc-----CCGCUGAcAG- -5' |
|||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 39721 | 0.67 | 0.694358 |
Target: 5'- gCGACGACGccGUCGACGaGGaUGACg--- -3' miRNA: 3'- aGCUGCUGC--UAGCUGC-CC-GCUGacag -5' |
|||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 39585 | 0.66 | 0.746457 |
Target: 5'- gUCGACGA-GGUCc-CGGGCGcGCUuGUCu -3' miRNA: 3'- -AGCUGCUgCUAGcuGCCCGC-UGA-CAG- -5' |
|||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 38910 | 0.66 | 0.77647 |
Target: 5'- aUGGCGAUGAcUCGACGacCGACUGg- -3' miRNA: 3'- aGCUGCUGCU-AGCUGCccGCUGACag -5' |
|||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 37861 | 0.67 | 0.683723 |
Target: 5'- uUCGaACGG-GAUgGcCGGGCGGgUGUCg -3' miRNA: 3'- -AGC-UGCUgCUAgCuGCCCGCUgACAG- -5' |
|||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 34794 | 0.66 | 0.756586 |
Target: 5'- -gGAUGACGccUCGACGGGCcuGACgcuUCg -3' miRNA: 3'- agCUGCUGCu-AGCUGCCCG--CUGac-AG- -5' |
|||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 33450 | 0.76 | 0.252273 |
Target: 5'- -aGGCGAUGAUgGGCuGGGCGaaGCUGUCc -3' miRNA: 3'- agCUGCUGCUAgCUG-CCCGC--UGACAG- -5' |
|||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 33385 | 0.68 | 0.6505 |
Target: 5'- aUCGGauGCGAUCuccucugGAuCGGGCGGCUGcUCg -3' miRNA: 3'- -AGCUgcUGCUAG-------CU-GCCCGCUGAC-AG- -5' |
|||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 32379 | 0.69 | 0.544662 |
Target: 5'- -aGACGACGAUCGAgcuCGGGCucgaaGGCUa-- -3' miRNA: 3'- agCUGCUGCUAGCU---GCCCG-----CUGAcag -5' |
|||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 30574 | 0.69 | 0.597777 |
Target: 5'- gCGGCGACGGUCGGCgaaccggagcgGGGUGAg-GUg -3' miRNA: 3'- aGCUGCUGCUAGCUG-----------CCCGCUgaCAg -5' |
|||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 30411 | 0.71 | 0.453635 |
Target: 5'- -aGcCGACG-UCGACGGGCGGCg--- -3' miRNA: 3'- agCuGCUGCuAGCUGCCCGCUGacag -5' |
|||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 29723 | 0.66 | 0.736216 |
Target: 5'- uUCGAgGA-GAUCGucCGGGCGACcGg- -3' miRNA: 3'- -AGCUgCUgCUAGCu-GCCCGCUGaCag -5' |
|||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 29690 | 0.66 | 0.746457 |
Target: 5'- gCGACG-CGGUCG-CGGaCG-CUGUCc -3' miRNA: 3'- aGCUGCuGCUAGCuGCCcGCuGACAG- -5' |
|||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 29432 | 0.71 | 0.432638 |
Target: 5'- gUCGACGGCGAgcuucaccgcgaacgCGGCguGGGCGcgaugcccaucgacGCUGUCg -3' miRNA: 3'- -AGCUGCUGCUa--------------GCUG--CCCGC--------------UGACAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home