miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16405 3' -55.6 NC_004084.1 + 54063 0.68 0.619274
Target:  5'- aCGcGCGACGAggaGACGGGCGAg---- -3'
miRNA:   3'- aGC-UGCUGCUag-CUGCCCGCUgacag -5'
16405 3' -55.6 NC_004084.1 + 42334 0.7 0.513519
Target:  5'- -gGACGA-GAUCGACGaGGCGGCg--- -3'
miRNA:   3'- agCUGCUgCUAGCUGC-CCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 3061 0.7 0.523825
Target:  5'- cUCGAgGAacucGUCGACGGGCcGCUcGUCg -3'
miRNA:   3'- -AGCUgCUgc--UAGCUGCCCGcUGA-CAG- -5'
16405 3' -55.6 NC_004084.1 + 15552 0.7 0.523825
Target:  5'- -gGACGACG-UCGACGGGUcg--GUCg -3'
miRNA:   3'- agCUGCUGCuAGCUGCCCGcugaCAG- -5'
16405 3' -55.6 NC_004084.1 + 39784 0.7 0.523825
Target:  5'- aCGGCGACGAggUCGGCcaacucGGCGACU-UCg -3'
miRNA:   3'- aGCUGCUGCU--AGCUGc-----CCGCUGAcAG- -5'
16405 3' -55.6 NC_004084.1 + 19923 0.69 0.565761
Target:  5'- cUCG-CGACGAUCGA-GGGCGAg---- -3'
miRNA:   3'- -AGCuGCUGCUAGCUgCCCGCUgacag -5'
16405 3' -55.6 NC_004084.1 + 1225 0.69 0.587066
Target:  5'- cUCGGCGGCGGgaUCGA-GGGCGAUc--- -3'
miRNA:   3'- -AGCUGCUGCU--AGCUgCCCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 27482 0.69 0.587066
Target:  5'- cUCGAgcuCGACG-UCGACGaGGCGAUcgacGUCu -3'
miRNA:   3'- -AGCU---GCUGCuAGCUGC-CCGCUGa---CAG- -5'
16405 3' -55.6 NC_004084.1 + 30574 0.69 0.597777
Target:  5'- gCGGCGACGGUCGGCgaaccggagcgGGGUGAg-GUg -3'
miRNA:   3'- aGCUGCUGCUAGCUG-----------CCCGCUgaCAg -5'
16405 3' -55.6 NC_004084.1 + 40553 0.7 0.513519
Target:  5'- -gGACaugagcaaaGCGAUCGauGCGGGCGACgagGUCa -3'
miRNA:   3'- agCUGc--------UGCUAGC--UGCCCGCUGa--CAG- -5'
16405 3' -55.6 NC_004084.1 + 53500 0.71 0.483131
Target:  5'- gUCGACGGCGAagucgUCGuGCGGuaGACUG-Cg -3'
miRNA:   3'- -AGCUGCUGCU-----AGC-UGCCcgCUGACaG- -5'
16405 3' -55.6 NC_004084.1 + 21709 0.71 0.46336
Target:  5'- gUCGGCGACcGUCGACGagauccGCGAC-GUCa -3'
miRNA:   3'- -AGCUGCUGcUAGCUGCc-----CGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 53261 0.78 0.166378
Target:  5'- aCGGCGACGAgaUCGGgcCGGGCGAC-GUCc -3'
miRNA:   3'- aGCUGCUGCU--AGCU--GCCCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 6065 0.74 0.307502
Target:  5'- aUCGAUGGCGAagaauUCGAggaGGGUGACUGg- -3'
miRNA:   3'- -AGCUGCUGCU-----AGCUg--CCCGCUGACag -5'
16405 3' -55.6 NC_004084.1 + 17970 0.73 0.363032
Target:  5'- aUGACGGCGGaaUCGuCGGcGCG-CUGUCg -3'
miRNA:   3'- aGCUGCUGCU--AGCuGCC-CGCuGACAG- -5'
16405 3' -55.6 NC_004084.1 + 58019 0.73 0.380125
Target:  5'- aUCGACGACGucugcgacAUCGGC-GGCGAC-GUCc -3'
miRNA:   3'- -AGCUGCUGC--------UAGCUGcCCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 42308 0.72 0.425144
Target:  5'- aUCGGCGACGAUCG-CGa-CGACcGUCg -3'
miRNA:   3'- -AGCUGCUGCUAGCuGCccGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 30411 0.71 0.453635
Target:  5'- -aGcCGACG-UCGACGGGCGGCg--- -3'
miRNA:   3'- agCuGCUGCuAGCUGCCCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 41612 0.71 0.453635
Target:  5'- gUCGAgGACGAaCG-CGaGGCGACgGUCc -3'
miRNA:   3'- -AGCUgCUGCUaGCuGC-CCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 25450 0.71 0.457512
Target:  5'- gUGAUGACGAacguggcuucgagguUCG-CGGGCGGC-GUCa -3'
miRNA:   3'- aGCUGCUGCU---------------AGCuGCCCGCUGaCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.