Results 21 - 40 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16405 | 3' | -55.6 | NC_004084.1 | + | 54063 | 0.68 | 0.619274 |
Target: 5'- aCGcGCGACGAggaGACGGGCGAg---- -3' miRNA: 3'- aGC-UGCUGCUag-CUGCCCGCUgacag -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 30574 | 0.69 | 0.597777 |
Target: 5'- gCGGCGACGGUCGGCgaaccggagcgGGGUGAg-GUg -3' miRNA: 3'- aGCUGCUGCUAGCUG-----------CCCGCUgaCAg -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 25450 | 0.71 | 0.457512 |
Target: 5'- gUGAUGACGAacguggcuucgagguUCG-CGGGCGGC-GUCa -3' miRNA: 3'- aGCUGCUGCU---------------AGCuGCCCGCUGaCAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 41612 | 0.71 | 0.453635 |
Target: 5'- gUCGAgGACGAaCG-CGaGGCGACgGUCc -3' miRNA: 3'- -AGCUgCUGCUaGCuGC-CCGCUGaCAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 30411 | 0.71 | 0.453635 |
Target: 5'- -aGcCGACG-UCGACGGGCGGCg--- -3' miRNA: 3'- agCuGCUGCuAGCUGCCCGCUGacag -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 42308 | 0.72 | 0.425144 |
Target: 5'- aUCGGCGACGAUCG-CGa-CGACcGUCg -3' miRNA: 3'- -AGCUGCUGCUAGCuGCccGCUGaCAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 58019 | 0.73 | 0.380125 |
Target: 5'- aUCGACGACGucugcgacAUCGGC-GGCGAC-GUCc -3' miRNA: 3'- -AGCUGCUGC--------UAGCUGcCCGCUGaCAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 17970 | 0.73 | 0.363032 |
Target: 5'- aUGACGGCGGaaUCGuCGGcGCG-CUGUCg -3' miRNA: 3'- aGCUGCUGCU--AGCuGCC-CGCuGACAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 6065 | 0.74 | 0.307502 |
Target: 5'- aUCGAUGGCGAagaauUCGAggaGGGUGACUGg- -3' miRNA: 3'- -AGCUGCUGCU-----AGCUg--CCCGCUGACag -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 53261 | 0.78 | 0.166378 |
Target: 5'- aCGGCGACGAgaUCGGgcCGGGCGAC-GUCc -3' miRNA: 3'- aGCUGCUGCU--AGCU--GCCCGCUGaCAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 21709 | 0.71 | 0.46336 |
Target: 5'- gUCGGCGACcGUCGACGagauccGCGAC-GUCa -3' miRNA: 3'- -AGCUGCUGcUAGCUGCc-----CGCUGaCAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 53500 | 0.71 | 0.483131 |
Target: 5'- gUCGACGGCGAagucgUCGuGCGGuaGACUG-Cg -3' miRNA: 3'- -AGCUGCUGCU-----AGC-UGCCcgCUGACaG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 27482 | 0.69 | 0.587066 |
Target: 5'- cUCGAgcuCGACG-UCGACGaGGCGAUcgacGUCu -3' miRNA: 3'- -AGCU---GCUGCuAGCUGC-CCGCUGa---CAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 1225 | 0.69 | 0.587066 |
Target: 5'- cUCGGCGGCGGgaUCGA-GGGCGAUc--- -3' miRNA: 3'- -AGCUGCUGCU--AGCUgCCCGCUGacag -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 19923 | 0.69 | 0.565761 |
Target: 5'- cUCG-CGACGAUCGA-GGGCGAg---- -3' miRNA: 3'- -AGCuGCUGCUAGCUgCCCGCUgacag -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 39784 | 0.7 | 0.523825 |
Target: 5'- aCGGCGACGAggUCGGCcaacucGGCGACU-UCg -3' miRNA: 3'- aGCUGCUGCU--AGCUGc-----CCGCUGAcAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 15552 | 0.7 | 0.523825 |
Target: 5'- -gGACGACG-UCGACGGGUcg--GUCg -3' miRNA: 3'- agCUGCUGCuAGCUGCCCGcugaCAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 3061 | 0.7 | 0.523825 |
Target: 5'- cUCGAgGAacucGUCGACGGGCcGCUcGUCg -3' miRNA: 3'- -AGCUgCUgc--UAGCUGCCCGcUGA-CAG- -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 42334 | 0.7 | 0.513519 |
Target: 5'- -gGACGA-GAUCGACGaGGCGGCg--- -3' miRNA: 3'- agCUGCUgCUAGCUGC-CCGCUGacag -5' |
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16405 | 3' | -55.6 | NC_004084.1 | + | 40553 | 0.7 | 0.513519 |
Target: 5'- -gGACaugagcaaaGCGAUCGauGCGGGCGACgagGUCa -3' miRNA: 3'- agCUGc--------UGCUAGC--UGCCCGCUGa--CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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