miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16405 3' -55.6 NC_004084.1 + 12962 0.75 0.28577
Target:  5'- cUCGGCuuCGAUCcGCGGGCGGC-GUCa -3'
miRNA:   3'- -AGCUGcuGCUAGcUGCCCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 213 0.68 0.608515
Target:  5'- cCGcACGGCcAUCGGCGGGgGAgUcGUCg -3'
miRNA:   3'- aGC-UGCUGcUAGCUGCCCgCUgA-CAG- -5'
16405 3' -55.6 NC_004084.1 + 21773 0.66 0.77647
Target:  5'- aUCGGCGGC-AUCGACGucGG-GGCcGUCa -3'
miRNA:   3'- -AGCUGCUGcUAGCUGC--CCgCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 6597 0.71 0.46336
Target:  5'- gUGGCGACaGUCGGCGGGCG-CggagGUa -3'
miRNA:   3'- aGCUGCUGcUAGCUGCCCGCuGa---CAg -5'
16405 3' -55.6 NC_004084.1 + 33450 0.76 0.252273
Target:  5'- -aGGCGAUGAUgGGCuGGGCGaaGCUGUCc -3'
miRNA:   3'- agCUGCUGCUAgCUG-CCCGC--UGACAG- -5'
16405 3' -55.6 NC_004084.1 + 7236 0.75 0.29216
Target:  5'- cCGAccuCGACGAUCGGCGcgugcucGGCGACcGUCu -3'
miRNA:   3'- aGCU---GCUGCUAGCUGC-------CCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 23070 0.66 0.77647
Target:  5'- gUCGcCGGCGAcgCGACGaGGUGGacGUCg -3'
miRNA:   3'- -AGCuGCUGCUa-GCUGC-CCGCUgaCAG- -5'
16405 3' -55.6 NC_004084.1 + 50265 0.66 0.77647
Target:  5'- gUUGGCGGCGAgguccUCGACGucugccgaccaGGCGuCgGUCa -3'
miRNA:   3'- -AGCUGCUGCU-----AGCUGC-----------CCGCuGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 49333 0.69 0.597777
Target:  5'- cUCGAuauCGGCGAUCGuguCGaGGUGAUcGUCg -3'
miRNA:   3'- -AGCU---GCUGCUAGCu--GC-CCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 30411 0.71 0.453635
Target:  5'- -aGcCGACG-UCGACGGGCGGCg--- -3'
miRNA:   3'- agCuGCUGCuAGCUGCCCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 5184 0.67 0.673041
Target:  5'- aUCGACGACuGGguaGACGaGGCGGCa--- -3'
miRNA:   3'- -AGCUGCUG-CUag-CUGC-CCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 15552 0.7 0.523825
Target:  5'- -gGACGACG-UCGACGGGUcg--GUCg -3'
miRNA:   3'- agCUGCUGCuAGCUGCCCGcugaCAG- -5'
16405 3' -55.6 NC_004084.1 + 3061 0.7 0.523825
Target:  5'- cUCGAgGAacucGUCGACGGGCcGCUcGUCg -3'
miRNA:   3'- -AGCUgCUgc--UAGCUGCCCGcUGA-CAG- -5'
16405 3' -55.6 NC_004084.1 + 42334 0.7 0.513519
Target:  5'- -gGACGA-GAUCGACGaGGCGGCg--- -3'
miRNA:   3'- agCUGCUgCUAGCUGC-CCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 56444 0.68 0.640813
Target:  5'- gCGaACGACGAucUCGACGGcGCG-CUcUCg -3'
miRNA:   3'- aGC-UGCUGCU--AGCUGCC-CGCuGAcAG- -5'
16405 3' -55.6 NC_004084.1 + 17155 0.68 0.640813
Target:  5'- aUGGgGACGAUCG-CcGGCGAC-GUCg -3'
miRNA:   3'- aGCUgCUGCUAGCuGcCCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 33385 0.68 0.6505
Target:  5'- aUCGGauGCGAUCuccucugGAuCGGGCGGCUGcUCg -3'
miRNA:   3'- -AGCUgcUGCUAG-------CU-GCCCGCUGAC-AG- -5'
16405 3' -55.6 NC_004084.1 + 9129 0.67 0.673041
Target:  5'- cUCGAuCGGCGucCGuCGGGCGGaaGUCg -3'
miRNA:   3'- -AGCU-GCUGCuaGCuGCCCGCUgaCAG- -5'
16405 3' -55.6 NC_004084.1 + 7461 0.67 0.673041
Target:  5'- cCGACGGCGAcUCGAgcGGCGACg--- -3'
miRNA:   3'- aGCUGCUGCU-AGCUgcCCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 11666 0.67 0.673041
Target:  5'- gUCGGCGACGAcuaCGGCGaggacaGCGAC-GUCu -3'
miRNA:   3'- -AGCUGCUGCUa--GCUGCc-----CGCUGaCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.