miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16405 3' -55.6 NC_004084.1 + 23716 0.66 0.756586
Target:  5'- -aGACGGCGAUgGACGcGGUGAg---- -3'
miRNA:   3'- agCUGCUGCUAgCUGC-CCGCUgacag -5'
16405 3' -55.6 NC_004084.1 + 51426 0.66 0.75356
Target:  5'- uUCGAgGGCGAcacgcugaucuacgUUGGCGagggccgcGGCGGCUGUa -3'
miRNA:   3'- -AGCUgCUGCU--------------AGCUGC--------CCGCUGACAg -5'
16405 3' -55.6 NC_004084.1 + 29690 0.66 0.746457
Target:  5'- gCGACG-CGGUCG-CGGaCG-CUGUCc -3'
miRNA:   3'- aGCUGCuGCUAGCuGCCcGCuGACAG- -5'
16405 3' -55.6 NC_004084.1 + 56444 0.68 0.640813
Target:  5'- gCGaACGACGAucUCGACGGcGCG-CUcUCg -3'
miRNA:   3'- aGC-UGCUGCU--AGCUGCC-CGCuGAcAG- -5'
16405 3' -55.6 NC_004084.1 + 42308 0.72 0.425144
Target:  5'- aUCGGCGACGAUCG-CGa-CGACcGUCg -3'
miRNA:   3'- -AGCUGCUGCUAGCuGCccGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 30411 0.71 0.453635
Target:  5'- -aGcCGACG-UCGACGGGCGGCg--- -3'
miRNA:   3'- agCuGCUGCuAGCUGCCCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 53500 0.71 0.483131
Target:  5'- gUCGACGGCGAagucgUCGuGCGGuaGACUG-Cg -3'
miRNA:   3'- -AGCUGCUGCU-----AGC-UGCCcgCUGACaG- -5'
16405 3' -55.6 NC_004084.1 + 40553 0.7 0.513519
Target:  5'- -gGACaugagcaaaGCGAUCGauGCGGGCGACgagGUCa -3'
miRNA:   3'- agCUGc--------UGCUAGC--UGCCCGCUGa--CAG- -5'
16405 3' -55.6 NC_004084.1 + 42334 0.7 0.513519
Target:  5'- -gGACGA-GAUCGACGaGGCGGCg--- -3'
miRNA:   3'- agCUGCUgCUAGCUGC-CCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 3061 0.7 0.523825
Target:  5'- cUCGAgGAacucGUCGACGGGCcGCUcGUCg -3'
miRNA:   3'- -AGCUgCUgc--UAGCUGCCCGcUGA-CAG- -5'
16405 3' -55.6 NC_004084.1 + 15552 0.7 0.523825
Target:  5'- -gGACGACG-UCGACGGGUcg--GUCg -3'
miRNA:   3'- agCUGCUGCuAGCUGCCCGcugaCAG- -5'
16405 3' -55.6 NC_004084.1 + 55968 0.68 0.619274
Target:  5'- aCGACGGCGA-CG-CGGaGgGGCUGaUCg -3'
miRNA:   3'- aGCUGCUGCUaGCuGCC-CgCUGAC-AG- -5'
16405 3' -55.6 NC_004084.1 + 7397 0.68 0.630042
Target:  5'- aUCGACGagcugagcaagGCGAUCGACgacgaGGGCGAUg--- -3'
miRNA:   3'- -AGCUGC-----------UGCUAGCUG-----CCCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 17155 0.68 0.640813
Target:  5'- aUGGgGACGAUCG-CcGGCGAC-GUCg -3'
miRNA:   3'- aGCUgCUGCUAGCuGcCCGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 33385 0.68 0.6505
Target:  5'- aUCGGauGCGAUCuccucugGAuCGGGCGGCUGcUCg -3'
miRNA:   3'- -AGCUgcUGCUAG-------CU-GCCCGCUGAC-AG- -5'
16405 3' -55.6 NC_004084.1 + 9129 0.67 0.673041
Target:  5'- cUCGAuCGGCGucCGuCGGGCGGaaGUCg -3'
miRNA:   3'- -AGCU-GCUGCuaGCuGCCCGCUgaCAG- -5'
16405 3' -55.6 NC_004084.1 + 7461 0.67 0.673041
Target:  5'- cCGACGGCGAcUCGAgcGGCGACg--- -3'
miRNA:   3'- aGCUGCUGCU-AGCUgcCCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 11666 0.67 0.673041
Target:  5'- gUCGGCGACGAcuaCGGCGaggacaGCGAC-GUCu -3'
miRNA:   3'- -AGCUGCUGCUa--GCUGCc-----CGCUGaCAG- -5'
16405 3' -55.6 NC_004084.1 + 5184 0.67 0.673041
Target:  5'- aUCGACGACuGGguaGACGaGGCGGCa--- -3'
miRNA:   3'- -AGCUGCUG-CUag-CUGC-CCGCUGacag -5'
16405 3' -55.6 NC_004084.1 + 2319 0.67 0.691173
Target:  5'- gUCGACGAgGA-CGAUGacgaggagaguacaGGCGGCgGUCu -3'
miRNA:   3'- -AGCUGCUgCUaGCUGC--------------CCGCUGaCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.