miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16405 5' -53 NC_004084.1 + 14109 0.66 0.860343
Target:  5'- gGCGGCAGUguccGACCUGC--GUCu-CAGCg -3'
miRNA:   3'- -CGCUGUCG----CUGGACGacUAGcuGUUG- -5'
16405 5' -53 NC_004084.1 + 45728 0.66 0.860343
Target:  5'- cCGAC-GCGG--UGCUGGUCGGCuACg -3'
miRNA:   3'- cGCUGuCGCUggACGACUAGCUGuUG- -5'
16405 5' -53 NC_004084.1 + 1916 0.66 0.860343
Target:  5'- cCGACAucaaGACCcaGCUGGUCGAguACg -3'
miRNA:   3'- cGCUGUcg--CUGGa-CGACUAGCUguUG- -5'
16405 5' -53 NC_004084.1 + 22434 0.66 0.860343
Target:  5'- cGCGGuCGGaGACgaGCUGAUCGAg--- -3'
miRNA:   3'- -CGCU-GUCgCUGgaCGACUAGCUguug -5'
16405 5' -53 NC_004084.1 + 40686 0.66 0.851893
Target:  5'- cGCGG-AGCcgagGACgaGCUGAUCGACugauGCc -3'
miRNA:   3'- -CGCUgUCG----CUGgaCGACUAGCUGu---UG- -5'
16405 5' -53 NC_004084.1 + 3200 0.66 0.851893
Target:  5'- cCGAgAGCGAUCUGCgGGuguaccgugUCGGCcACg -3'
miRNA:   3'- cGCUgUCGCUGGACGaCU---------AGCUGuUG- -5'
16405 5' -53 NC_004084.1 + 47390 0.66 0.843207
Target:  5'- uCGACGGCGAgCUcCaggGcgCGACGACg -3'
miRNA:   3'- cGCUGUCGCUgGAcGa--CuaGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 8240 0.66 0.843207
Target:  5'- gGCGACgucgAGaCGAUCgacgccGCUGAcgacauccUCGACAACg -3'
miRNA:   3'- -CGCUG----UC-GCUGGa-----CGACU--------AGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 56982 0.66 0.843207
Target:  5'- aGCGAaggaGGCGGCCgag-GA-CGGCGACg -3'
miRNA:   3'- -CGCUg---UCGCUGGacgaCUaGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 40132 0.66 0.843207
Target:  5'- cCGACGGUGGCC---UGAUCGGCcucAACg -3'
miRNA:   3'- cGCUGUCGCUGGacgACUAGCUG---UUG- -5'
16405 5' -53 NC_004084.1 + 329 0.66 0.843207
Target:  5'- gGCG-CGGCGACCag--GA-CGGCAACg -3'
miRNA:   3'- -CGCuGUCGCUGGacgaCUaGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 41993 0.66 0.843207
Target:  5'- cCGGCAGCGuuC-GCUGAcgCGACGGa -3'
miRNA:   3'- cGCUGUCGCugGaCGACUa-GCUGUUg -5'
16405 5' -53 NC_004084.1 + 39714 0.66 0.825161
Target:  5'- aGUGACGGCGACgacGCc-GUCGACGAg -3'
miRNA:   3'- -CGCUGUCGCUGga-CGacUAGCUGUUg -5'
16405 5' -53 NC_004084.1 + 11930 0.66 0.825161
Target:  5'- gGCGACGucGCGACCaGCgagGAcUCGAUcgAGCu -3'
miRNA:   3'- -CGCUGU--CGCUGGaCGa--CU-AGCUG--UUG- -5'
16405 5' -53 NC_004084.1 + 4280 0.66 0.815821
Target:  5'- cGCGaACGGCGuCaggUGCUGGaagcCGACGGCg -3'
miRNA:   3'- -CGC-UGUCGCuGg--ACGACUa---GCUGUUG- -5'
16405 5' -53 NC_004084.1 + 42725 0.66 0.815821
Target:  5'- cGCGuCGGCGA---GUUGAUCGGCuGCg -3'
miRNA:   3'- -CGCuGUCGCUggaCGACUAGCUGuUG- -5'
16405 5' -53 NC_004084.1 + 48348 0.66 0.814876
Target:  5'- aCGGCGGCGAUCaacGCUGGuucccggucgagaUCGuCAACg -3'
miRNA:   3'- cGCUGUCGCUGGa--CGACU-------------AGCuGUUG- -5'
16405 5' -53 NC_004084.1 + 24399 0.67 0.806283
Target:  5'- gGgGGCAGCGuaGCgUGCgauuaccuUCGACAACg -3'
miRNA:   3'- -CgCUGUCGC--UGgACGacu-----AGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 22977 0.67 0.796558
Target:  5'- cCGACcgaguccuGGuCGACCUcGCgagcgaGAUCGACGACg -3'
miRNA:   3'- cGCUG--------UC-GCUGGA-CGa-----CUAGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 57735 0.67 0.796558
Target:  5'- cGCGACucacccGCGGCCUGCUcg-UGGCGu- -3'
miRNA:   3'- -CGCUGu-----CGCUGGACGAcuaGCUGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.