Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16405 | 5' | -53 | NC_004084.1 | + | 57531 | 0.69 | 0.680521 |
Target: 5'- cCGACAGCGAuaccgauuCCgacgGCgacGUCGACGACu -3' miRNA: 3'- cGCUGUCGCU--------GGa---CGac-UAGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 10298 | 0.69 | 0.666128 |
Target: 5'- cGUGACGaCGACCggccgcaacuacguUGCUGGccucugguUCGACAGCa -3' miRNA: 3'- -CGCUGUcGCUGG--------------ACGACU--------AGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 5444 | 0.69 | 0.658353 |
Target: 5'- cGCGAuCGGCGACCaGCgcacucgCGACGAUc -3' miRNA: 3'- -CGCU-GUCGCUGGaCGacua---GCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 55268 | 0.68 | 0.734913 |
Target: 5'- aCGGuCGGCGGCgUGUaGAUCGuCAGCu -3' miRNA: 3'- cGCU-GUCGCUGgACGaCUAGCuGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 910 | 0.68 | 0.734913 |
Target: 5'- gGCGucgucggaguucGCuGCGGCCUGCUGGU-GACGc- -3' miRNA: 3'- -CGC------------UGuCGCUGGACGACUAgCUGUug -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 29989 | 0.68 | 0.745521 |
Target: 5'- cCGGCGuCGACCUggucGCUGGU-GACGACg -3' miRNA: 3'- cGCUGUcGCUGGA----CGACUAgCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 15520 | 0.68 | 0.734913 |
Target: 5'- cGCGGCAGCuuGGCucucaCUGCagguaUGAUgGACGACg -3' miRNA: 3'- -CGCUGUCG--CUG-----GACG-----ACUAgCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 44911 | 0.68 | 0.745521 |
Target: 5'- gGCGACGacccGCG-CCUaGCUGAggUGACGAUg -3' miRNA: 3'- -CGCUGU----CGCuGGA-CGACUa-GCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 24399 | 0.67 | 0.806283 |
Target: 5'- gGgGGCAGCGuaGCgUGCgauuaccuUCGACAACg -3' miRNA: 3'- -CgCUGUCGC--UGgACGacu-----AGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 46812 | 0.67 | 0.776592 |
Target: 5'- aGCaACGucGCGACCUGCgacaacugCGGCGACa -3' miRNA: 3'- -CGcUGU--CGCUGGACGacua----GCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 47863 | 0.67 | 0.777605 |
Target: 5'- uCGACAGCcACCccgagcuacucguccGCUGGcUCGGCAACg -3' miRNA: 3'- cGCUGUCGcUGGa--------------CGACU-AGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 49631 | 0.67 | 0.780637 |
Target: 5'- aCGACAuGUgGACCUGCucgagcugugggcggUGGUCGACAu- -3' miRNA: 3'- cGCUGU-CG-CUGGACG---------------ACUAGCUGUug -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 11055 | 0.67 | 0.775576 |
Target: 5'- cGCGGacgaaggGGCGGCCgccgacgaacaugUGCUugaGGUCGGCGACg -3' miRNA: 3'- -CGCUg------UCGCUGG-------------ACGA---CUAGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 39318 | 0.67 | 0.776592 |
Target: 5'- aCGGUAGCcGCCgcggUGCUGAUCGACGu- -3' miRNA: 3'- cGCUGUCGcUGG----ACGACUAGCUGUug -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 4807 | 0.67 | 0.796558 |
Target: 5'- aGCGGCAGagaaGGCggGCcgGAUCGGCGGg -3' miRNA: 3'- -CGCUGUCg---CUGgaCGa-CUAGCUGUUg -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 57735 | 0.67 | 0.796558 |
Target: 5'- cGCGACucacccGCGGCCUGCUcg-UGGCGu- -3' miRNA: 3'- -CGCUGu-----CGCUGGACGAcuaGCUGUug -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 22977 | 0.67 | 0.796558 |
Target: 5'- cCGACcgaguccuGGuCGACCUcGCgagcgaGAUCGACGACg -3' miRNA: 3'- cGCUG--------UC-GCUGGA-CGa-----CUAGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 329 | 0.66 | 0.843207 |
Target: 5'- gGCG-CGGCGACCag--GA-CGGCAACg -3' miRNA: 3'- -CGCuGUCGCUGGacgaCUaGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 11930 | 0.66 | 0.825161 |
Target: 5'- gGCGACGucGCGACCaGCgagGAcUCGAUcgAGCu -3' miRNA: 3'- -CGCUGU--CGCUGGaCGa--CU-AGCUG--UUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 39714 | 0.66 | 0.825161 |
Target: 5'- aGUGACGGCGACgacGCc-GUCGACGAg -3' miRNA: 3'- -CGCUGUCGCUGga-CGacUAGCUGUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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