miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16405 5' -53 NC_004084.1 + 19351 1.13 0.000951
Target:  5'- cGCGACAGCGACCUGCUGAUCGACAACg -3'
miRNA:   3'- -CGCUGUCGCUGGACGACUAGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 51313 0.76 0.302909
Target:  5'- -aGACGGCGACCgagGC-GAUCGAguGCg -3'
miRNA:   3'- cgCUGUCGCUGGa--CGaCUAGCUguUG- -5'
16405 5' -53 NC_004084.1 + 55968 0.76 0.310604
Target:  5'- aCGACGGCGACgCggagggGCUGAUCGcCGAUg -3'
miRNA:   3'- cGCUGUCGCUG-Ga-----CGACUAGCuGUUG- -5'
16405 5' -53 NC_004084.1 + 12196 0.76 0.318446
Target:  5'- --aGCGGCGACCUGaugaUGAUCGuCGACg -3'
miRNA:   3'- cgcUGUCGCUGGACg---ACUAGCuGUUG- -5'
16405 5' -53 NC_004084.1 + 26282 0.73 0.443407
Target:  5'- uGCGACGGgacgcaguCGACCUcCUGGugcUCGACGACg -3'
miRNA:   3'- -CGCUGUC--------GCUGGAcGACU---AGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 23358 0.72 0.492184
Target:  5'- aCGAUGGCGACCgccugccgguaucagGCgaucaucgaugagaUGAUCGACGACg -3'
miRNA:   3'- cGCUGUCGCUGGa--------------CG--------------ACUAGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 35287 0.72 0.494271
Target:  5'- gGCGAaguCAGCGcgagaGCCUGCUGAcguUCGuCGGCu -3'
miRNA:   3'- -CGCU---GUCGC-----UGGACGACU---AGCuGUUG- -5'
16405 5' -53 NC_004084.1 + 33107 0.71 0.536797
Target:  5'- cGCGACGGCGGCCU-CUG--CGGCuACu -3'
miRNA:   3'- -CGCUGUCGCUGGAcGACuaGCUGuUG- -5'
16405 5' -53 NC_004084.1 + 26945 0.71 0.562917
Target:  5'- cGCGGCGgacGCGcucaccgcauccauuGCCcGCUGGUCGACAGa -3'
miRNA:   3'- -CGCUGU---CGC---------------UGGaCGACUAGCUGUUg -5'
16405 5' -53 NC_004084.1 + 7388 0.71 0.569503
Target:  5'- aGCGACcGCaucGACgaGCUGAgcaaggcgaUCGACGACg -3'
miRNA:   3'- -CGCUGuCG---CUGgaCGACU---------AGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 28927 0.71 0.569503
Target:  5'- aGCGACGuCGGCCUcgggaGCgcGUCGACAGCg -3'
miRNA:   3'- -CGCUGUcGCUGGA-----CGacUAGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 10592 0.71 0.57721
Target:  5'- aCGAUccgGGCGAaagguucggauacaCC-GCUGAUCGACAACu -3'
miRNA:   3'- cGCUG---UCGCU--------------GGaCGACUAGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 41910 0.71 0.58052
Target:  5'- cGCGGCGcGCGaucGCCUGCUGuggCGAUAu- -3'
miRNA:   3'- -CGCUGU-CGC---UGGACGACua-GCUGUug -5'
16405 5' -53 NC_004084.1 + 25103 0.7 0.636084
Target:  5'- cGCGGCGGCGGCaggUGUUGA-CGcuCAACg -3'
miRNA:   3'- -CGCUGUCGCUGg--ACGACUaGCu-GUUG- -5'
16405 5' -53 NC_004084.1 + 58002 0.7 0.636084
Target:  5'- aCGAguGCGACgUcCaGAUCGACGACg -3'
miRNA:   3'- cGCUguCGCUGgAcGaCUAGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 35516 0.7 0.647225
Target:  5'- cGCGAguGgGAcauCCUGCgcgUGAUCGAgGACc -3'
miRNA:   3'- -CGCUguCgCU---GGACG---ACUAGCUgUUG- -5'
16405 5' -53 NC_004084.1 + 16883 0.69 0.658353
Target:  5'- aGCG-CGGCG-UCUGCUccGAUCGACGc- -3'
miRNA:   3'- -CGCuGUCGCuGGACGA--CUAGCUGUug -5'
16405 5' -53 NC_004084.1 + 5444 0.69 0.658353
Target:  5'- cGCGAuCGGCGACCaGCgcacucgCGACGAUc -3'
miRNA:   3'- -CGCU-GUCGCUGGaCGacua---GCUGUUG- -5'
16405 5' -53 NC_004084.1 + 23076 0.69 0.658353
Target:  5'- gGCGAC-GCGACgaGgUGGacgUCGGCGACc -3'
miRNA:   3'- -CGCUGuCGCUGgaCgACU---AGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 10298 0.69 0.666128
Target:  5'- cGUGACGaCGACCggccgcaacuacguUGCUGGccucugguUCGACAGCa -3'
miRNA:   3'- -CGCUGUcGCUGG--------------ACGACU--------AGCUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.