miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16405 5' -53 NC_004084.1 + 7461 0.69 0.680521
Target:  5'- cCGACGGCGACUcgaGCgg--CGACGGCg -3'
miRNA:   3'- cGCUGUCGCUGGa--CGacuaGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 57531 0.69 0.680521
Target:  5'- cCGACAGCGAuaccgauuCCgacgGCgacGUCGACGACu -3'
miRNA:   3'- cGCUGUCGCU--------GGa---CGac-UAGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 8618 0.69 0.702501
Target:  5'- gGCGACGaCGACUUcGC-GAUCGAgAACa -3'
miRNA:   3'- -CGCUGUcGCUGGA-CGaCUAGCUgUUG- -5'
16405 5' -53 NC_004084.1 + 910 0.68 0.734913
Target:  5'- gGCGucgucggaguucGCuGCGGCCUGCUGGU-GACGc- -3'
miRNA:   3'- -CGC------------UGuCGCUGGACGACUAgCUGUug -5'
16405 5' -53 NC_004084.1 + 55268 0.68 0.734913
Target:  5'- aCGGuCGGCGGCgUGUaGAUCGuCAGCu -3'
miRNA:   3'- cGCU-GUCGCUGgACGaCUAGCuGUUG- -5'
16405 5' -53 NC_004084.1 + 15520 0.68 0.734913
Target:  5'- cGCGGCAGCuuGGCucucaCUGCagguaUGAUgGACGACg -3'
miRNA:   3'- -CGCUGUCG--CUG-----GACG-----ACUAgCUGUUG- -5'
16405 5' -53 NC_004084.1 + 29989 0.68 0.745521
Target:  5'- cCGGCGuCGACCUggucGCUGGU-GACGACg -3'
miRNA:   3'- cGCUGUcGCUGGA----CGACUAgCUGUUG- -5'
16405 5' -53 NC_004084.1 + 44911 0.68 0.745521
Target:  5'- gGCGACGacccGCG-CCUaGCUGAggUGACGAUg -3'
miRNA:   3'- -CGCUGU----CGCuGGA-CGACUa-GCUGUUG- -5'
16405 5' -53 NC_004084.1 + 11055 0.67 0.775576
Target:  5'- cGCGGacgaaggGGCGGCCgccgacgaacaugUGCUugaGGUCGGCGACg -3'
miRNA:   3'- -CGCUg------UCGCUGG-------------ACGA---CUAGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 39318 0.67 0.776592
Target:  5'- aCGGUAGCcGCCgcggUGCUGAUCGACGu- -3'
miRNA:   3'- cGCUGUCGcUGG----ACGACUAGCUGUug -5'
16405 5' -53 NC_004084.1 + 46812 0.67 0.776592
Target:  5'- aGCaACGucGCGACCUGCgacaacugCGGCGACa -3'
miRNA:   3'- -CGcUGU--CGCUGGACGacua----GCUGUUG- -5'
16405 5' -53 NC_004084.1 + 47863 0.67 0.777605
Target:  5'- uCGACAGCcACCccgagcuacucguccGCUGGcUCGGCAACg -3'
miRNA:   3'- cGCUGUCGcUGGa--------------CGACU-AGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 49631 0.67 0.780637
Target:  5'- aCGACAuGUgGACCUGCucgagcugugggcggUGGUCGACAu- -3'
miRNA:   3'- cGCUGU-CG-CUGGACG---------------ACUAGCUGUug -5'
16405 5' -53 NC_004084.1 + 57735 0.67 0.796558
Target:  5'- cGCGACucacccGCGGCCUGCUcg-UGGCGu- -3'
miRNA:   3'- -CGCUGu-----CGCUGGACGAcuaGCUGUug -5'
16405 5' -53 NC_004084.1 + 4807 0.67 0.796558
Target:  5'- aGCGGCAGagaaGGCggGCcgGAUCGGCGGg -3'
miRNA:   3'- -CGCUGUCg---CUGgaCGa-CUAGCUGUUg -5'
16405 5' -53 NC_004084.1 + 22977 0.67 0.796558
Target:  5'- cCGACcgaguccuGGuCGACCUcGCgagcgaGAUCGACGACg -3'
miRNA:   3'- cGCUG--------UC-GCUGGA-CGa-----CUAGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 24399 0.67 0.806283
Target:  5'- gGgGGCAGCGuaGCgUGCgauuaccuUCGACAACg -3'
miRNA:   3'- -CgCUGUCGC--UGgACGacu-----AGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 48348 0.66 0.814876
Target:  5'- aCGGCGGCGAUCaacGCUGGuucccggucgagaUCGuCAACg -3'
miRNA:   3'- cGCUGUCGCUGGa--CGACU-------------AGCuGUUG- -5'
16405 5' -53 NC_004084.1 + 4280 0.66 0.815821
Target:  5'- cGCGaACGGCGuCaggUGCUGGaagcCGACGGCg -3'
miRNA:   3'- -CGC-UGUCGCuGg--ACGACUa---GCUGUUG- -5'
16405 5' -53 NC_004084.1 + 42725 0.66 0.815821
Target:  5'- cGCGuCGGCGA---GUUGAUCGGCuGCg -3'
miRNA:   3'- -CGCuGUCGCUggaCGACUAGCUGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.