miRNA display CGI


Results 21 - 40 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16405 5' -53 NC_004084.1 + 57735 0.67 0.796558
Target:  5'- cGCGACucacccGCGGCCUGCUcg-UGGCGu- -3'
miRNA:   3'- -CGCUGu-----CGCUGGACGAcuaGCUGUug -5'
16405 5' -53 NC_004084.1 + 49631 0.67 0.780637
Target:  5'- aCGACAuGUgGACCUGCucgagcugugggcggUGGUCGACAu- -3'
miRNA:   3'- cGCUGU-CG-CUGGACG---------------ACUAGCUGUug -5'
16405 5' -53 NC_004084.1 + 47863 0.67 0.777605
Target:  5'- uCGACAGCcACCccgagcuacucguccGCUGGcUCGGCAACg -3'
miRNA:   3'- cGCUGUCGcUGGa--------------CGACU-AGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 46812 0.67 0.776592
Target:  5'- aGCaACGucGCGACCUGCgacaacugCGGCGACa -3'
miRNA:   3'- -CGcUGU--CGCUGGACGacua----GCUGUUG- -5'
16405 5' -53 NC_004084.1 + 39318 0.67 0.776592
Target:  5'- aCGGUAGCcGCCgcggUGCUGAUCGACGu- -3'
miRNA:   3'- cGCUGUCGcUGG----ACGACUAGCUGUug -5'
16405 5' -53 NC_004084.1 + 11055 0.67 0.775576
Target:  5'- cGCGGacgaaggGGCGGCCgccgacgaacaugUGCUugaGGUCGGCGACg -3'
miRNA:   3'- -CGCUg------UCGCUGG-------------ACGA---CUAGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 44911 0.68 0.745521
Target:  5'- gGCGACGacccGCG-CCUaGCUGAggUGACGAUg -3'
miRNA:   3'- -CGCUGU----CGCuGGA-CGACUa-GCUGUUG- -5'
16405 5' -53 NC_004084.1 + 29989 0.68 0.745521
Target:  5'- cCGGCGuCGACCUggucGCUGGU-GACGACg -3'
miRNA:   3'- cGCUGUcGCUGGA----CGACUAgCUGUUG- -5'
16405 5' -53 NC_004084.1 + 15520 0.68 0.734913
Target:  5'- cGCGGCAGCuuGGCucucaCUGCagguaUGAUgGACGACg -3'
miRNA:   3'- -CGCUGUCG--CUG-----GACG-----ACUAgCUGUUG- -5'
16405 5' -53 NC_004084.1 + 910 0.68 0.734913
Target:  5'- gGCGucgucggaguucGCuGCGGCCUGCUGGU-GACGc- -3'
miRNA:   3'- -CGC------------UGuCGCUGGACGACUAgCUGUug -5'
16405 5' -53 NC_004084.1 + 55268 0.68 0.734913
Target:  5'- aCGGuCGGCGGCgUGUaGAUCGuCAGCu -3'
miRNA:   3'- cGCU-GUCGCUGgACGaCUAGCuGUUG- -5'
16405 5' -53 NC_004084.1 + 8618 0.69 0.702501
Target:  5'- gGCGACGaCGACUUcGC-GAUCGAgAACa -3'
miRNA:   3'- -CGCUGUcGCUGGA-CGaCUAGCUgUUG- -5'
16405 5' -53 NC_004084.1 + 57531 0.69 0.680521
Target:  5'- cCGACAGCGAuaccgauuCCgacgGCgacGUCGACGACu -3'
miRNA:   3'- cGCUGUCGCU--------GGa---CGac-UAGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 7461 0.69 0.680521
Target:  5'- cCGACGGCGACUcgaGCgg--CGACGGCg -3'
miRNA:   3'- cGCUGUCGCUGGa--CGacuaGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 10298 0.69 0.666128
Target:  5'- cGUGACGaCGACCggccgcaacuacguUGCUGGccucugguUCGACAGCa -3'
miRNA:   3'- -CGCUGUcGCUGG--------------ACGACU--------AGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 16883 0.69 0.658353
Target:  5'- aGCG-CGGCG-UCUGCUccGAUCGACGc- -3'
miRNA:   3'- -CGCuGUCGCuGGACGA--CUAGCUGUug -5'
16405 5' -53 NC_004084.1 + 23076 0.69 0.658353
Target:  5'- gGCGAC-GCGACgaGgUGGacgUCGGCGACc -3'
miRNA:   3'- -CGCUGuCGCUGgaCgACU---AGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 5444 0.69 0.658353
Target:  5'- cGCGAuCGGCGACCaGCgcacucgCGACGAUc -3'
miRNA:   3'- -CGCU-GUCGCUGGaCGacua---GCUGUUG- -5'
16405 5' -53 NC_004084.1 + 35516 0.7 0.647225
Target:  5'- cGCGAguGgGAcauCCUGCgcgUGAUCGAgGACc -3'
miRNA:   3'- -CGCUguCgCU---GGACG---ACUAGCUgUUG- -5'
16405 5' -53 NC_004084.1 + 25103 0.7 0.636084
Target:  5'- cGCGGCGGCGGCaggUGUUGA-CGcuCAACg -3'
miRNA:   3'- -CGCUGUCGCUGg--ACGACUaGCu-GUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.