miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16405 5' -53 NC_004084.1 + 329 0.66 0.843207
Target:  5'- gGCG-CGGCGACCag--GA-CGGCAACg -3'
miRNA:   3'- -CGCuGUCGCUGGacgaCUaGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 910 0.68 0.734913
Target:  5'- gGCGucgucggaguucGCuGCGGCCUGCUGGU-GACGc- -3'
miRNA:   3'- -CGC------------UGuCGCUGGACGACUAgCUGUug -5'
16405 5' -53 NC_004084.1 + 1916 0.66 0.860343
Target:  5'- cCGACAucaaGACCcaGCUGGUCGAguACg -3'
miRNA:   3'- cGCUGUcg--CUGGa-CGACUAGCUguUG- -5'
16405 5' -53 NC_004084.1 + 3200 0.66 0.851893
Target:  5'- cCGAgAGCGAUCUGCgGGuguaccgugUCGGCcACg -3'
miRNA:   3'- cGCUgUCGCUGGACGaCU---------AGCUGuUG- -5'
16405 5' -53 NC_004084.1 + 4280 0.66 0.815821
Target:  5'- cGCGaACGGCGuCaggUGCUGGaagcCGACGGCg -3'
miRNA:   3'- -CGC-UGUCGCuGg--ACGACUa---GCUGUUG- -5'
16405 5' -53 NC_004084.1 + 4807 0.67 0.796558
Target:  5'- aGCGGCAGagaaGGCggGCcgGAUCGGCGGg -3'
miRNA:   3'- -CGCUGUCg---CUGgaCGa-CUAGCUGUUg -5'
16405 5' -53 NC_004084.1 + 5444 0.69 0.658353
Target:  5'- cGCGAuCGGCGACCaGCgcacucgCGACGAUc -3'
miRNA:   3'- -CGCU-GUCGCUGGaCGacua---GCUGUUG- -5'
16405 5' -53 NC_004084.1 + 7388 0.71 0.569503
Target:  5'- aGCGACcGCaucGACgaGCUGAgcaaggcgaUCGACGACg -3'
miRNA:   3'- -CGCUGuCG---CUGgaCGACU---------AGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 7461 0.69 0.680521
Target:  5'- cCGACGGCGACUcgaGCgg--CGACGGCg -3'
miRNA:   3'- cGCUGUCGCUGGa--CGacuaGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 8240 0.66 0.843207
Target:  5'- gGCGACgucgAGaCGAUCgacgccGCUGAcgacauccUCGACAACg -3'
miRNA:   3'- -CGCUG----UC-GCUGGa-----CGACU--------AGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 8618 0.69 0.702501
Target:  5'- gGCGACGaCGACUUcGC-GAUCGAgAACa -3'
miRNA:   3'- -CGCUGUcGCUGGA-CGaCUAGCUgUUG- -5'
16405 5' -53 NC_004084.1 + 10298 0.69 0.666128
Target:  5'- cGUGACGaCGACCggccgcaacuacguUGCUGGccucugguUCGACAGCa -3'
miRNA:   3'- -CGCUGUcGCUGG--------------ACGACU--------AGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 10592 0.71 0.57721
Target:  5'- aCGAUccgGGCGAaagguucggauacaCC-GCUGAUCGACAACu -3'
miRNA:   3'- cGCUG---UCGCU--------------GGaCGACUAGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 11055 0.67 0.775576
Target:  5'- cGCGGacgaaggGGCGGCCgccgacgaacaugUGCUugaGGUCGGCGACg -3'
miRNA:   3'- -CGCUg------UCGCUGG-------------ACGA---CUAGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 11930 0.66 0.825161
Target:  5'- gGCGACGucGCGACCaGCgagGAcUCGAUcgAGCu -3'
miRNA:   3'- -CGCUGU--CGCUGGaCGa--CU-AGCUG--UUG- -5'
16405 5' -53 NC_004084.1 + 12196 0.76 0.318446
Target:  5'- --aGCGGCGACCUGaugaUGAUCGuCGACg -3'
miRNA:   3'- cgcUGUCGCUGGACg---ACUAGCuGUUG- -5'
16405 5' -53 NC_004084.1 + 14109 0.66 0.860343
Target:  5'- gGCGGCAGUguccGACCUGC--GUCu-CAGCg -3'
miRNA:   3'- -CGCUGUCG----CUGGACGacUAGcuGUUG- -5'
16405 5' -53 NC_004084.1 + 15520 0.68 0.734913
Target:  5'- cGCGGCAGCuuGGCucucaCUGCagguaUGAUgGACGACg -3'
miRNA:   3'- -CGCUGUCG--CUG-----GACG-----ACUAgCUGUUG- -5'
16405 5' -53 NC_004084.1 + 16883 0.69 0.658353
Target:  5'- aGCG-CGGCG-UCUGCUccGAUCGACGc- -3'
miRNA:   3'- -CGCuGUCGCuGGACGA--CUAGCUGUug -5'
16405 5' -53 NC_004084.1 + 19351 1.13 0.000951
Target:  5'- cGCGACAGCGACCUGCUGAUCGACAACg -3'
miRNA:   3'- -CGCUGUCGCUGGACGACUAGCUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.