miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16405 5' -53 NC_004084.1 + 22434 0.66 0.860343
Target:  5'- cGCGGuCGGaGACgaGCUGAUCGAg--- -3'
miRNA:   3'- -CGCU-GUCgCUGgaCGACUAGCUguug -5'
16405 5' -53 NC_004084.1 + 22977 0.67 0.796558
Target:  5'- cCGACcgaguccuGGuCGACCUcGCgagcgaGAUCGACGACg -3'
miRNA:   3'- cGCUG--------UC-GCUGGA-CGa-----CUAGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 23076 0.69 0.658353
Target:  5'- gGCGAC-GCGACgaGgUGGacgUCGGCGACc -3'
miRNA:   3'- -CGCUGuCGCUGgaCgACU---AGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 23358 0.72 0.492184
Target:  5'- aCGAUGGCGACCgccugccgguaucagGCgaucaucgaugagaUGAUCGACGACg -3'
miRNA:   3'- cGCUGUCGCUGGa--------------CG--------------ACUAGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 24399 0.67 0.806283
Target:  5'- gGgGGCAGCGuaGCgUGCgauuaccuUCGACAACg -3'
miRNA:   3'- -CgCUGUCGC--UGgACGacu-----AGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 25103 0.7 0.636084
Target:  5'- cGCGGCGGCGGCaggUGUUGA-CGcuCAACg -3'
miRNA:   3'- -CGCUGUCGCUGg--ACGACUaGCu-GUUG- -5'
16405 5' -53 NC_004084.1 + 26282 0.73 0.443407
Target:  5'- uGCGACGGgacgcaguCGACCUcCUGGugcUCGACGACg -3'
miRNA:   3'- -CGCUGUC--------GCUGGAcGACU---AGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 26945 0.71 0.562917
Target:  5'- cGCGGCGgacGCGcucaccgcauccauuGCCcGCUGGUCGACAGa -3'
miRNA:   3'- -CGCUGU---CGC---------------UGGaCGACUAGCUGUUg -5'
16405 5' -53 NC_004084.1 + 28927 0.71 0.569503
Target:  5'- aGCGACGuCGGCCUcgggaGCgcGUCGACAGCg -3'
miRNA:   3'- -CGCUGUcGCUGGA-----CGacUAGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 29989 0.68 0.745521
Target:  5'- cCGGCGuCGACCUggucGCUGGU-GACGACg -3'
miRNA:   3'- cGCUGUcGCUGGA----CGACUAgCUGUUG- -5'
16405 5' -53 NC_004084.1 + 33107 0.71 0.536797
Target:  5'- cGCGACGGCGGCCU-CUG--CGGCuACu -3'
miRNA:   3'- -CGCUGUCGCUGGAcGACuaGCUGuUG- -5'
16405 5' -53 NC_004084.1 + 35287 0.72 0.494271
Target:  5'- gGCGAaguCAGCGcgagaGCCUGCUGAcguUCGuCGGCu -3'
miRNA:   3'- -CGCU---GUCGC-----UGGACGACU---AGCuGUUG- -5'
16405 5' -53 NC_004084.1 + 35516 0.7 0.647225
Target:  5'- cGCGAguGgGAcauCCUGCgcgUGAUCGAgGACc -3'
miRNA:   3'- -CGCUguCgCU---GGACG---ACUAGCUgUUG- -5'
16405 5' -53 NC_004084.1 + 39318 0.67 0.776592
Target:  5'- aCGGUAGCcGCCgcggUGCUGAUCGACGu- -3'
miRNA:   3'- cGCUGUCGcUGG----ACGACUAGCUGUug -5'
16405 5' -53 NC_004084.1 + 39714 0.66 0.825161
Target:  5'- aGUGACGGCGACgacGCc-GUCGACGAg -3'
miRNA:   3'- -CGCUGUCGCUGga-CGacUAGCUGUUg -5'
16405 5' -53 NC_004084.1 + 40132 0.66 0.843207
Target:  5'- cCGACGGUGGCC---UGAUCGGCcucAACg -3'
miRNA:   3'- cGCUGUCGCUGGacgACUAGCUG---UUG- -5'
16405 5' -53 NC_004084.1 + 40686 0.66 0.851893
Target:  5'- cGCGG-AGCcgagGACgaGCUGAUCGACugauGCc -3'
miRNA:   3'- -CGCUgUCG----CUGgaCGACUAGCUGu---UG- -5'
16405 5' -53 NC_004084.1 + 41910 0.71 0.58052
Target:  5'- cGCGGCGcGCGaucGCCUGCUGuggCGAUAu- -3'
miRNA:   3'- -CGCUGU-CGC---UGGACGACua-GCUGUug -5'
16405 5' -53 NC_004084.1 + 41993 0.66 0.843207
Target:  5'- cCGGCAGCGuuC-GCUGAcgCGACGGa -3'
miRNA:   3'- cGCUGUCGCugGaCGACUa-GCUGUUg -5'
16405 5' -53 NC_004084.1 + 42725 0.66 0.815821
Target:  5'- cGCGuCGGCGA---GUUGAUCGGCuGCg -3'
miRNA:   3'- -CGCuGUCGCUggaCGACUAGCUGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.