miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16405 5' -53 NC_004084.1 + 58002 0.7 0.636084
Target:  5'- aCGAguGCGACgUcCaGAUCGACGACg -3'
miRNA:   3'- cGCUguCGCUGgAcGaCUAGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 57735 0.67 0.796558
Target:  5'- cGCGACucacccGCGGCCUGCUcg-UGGCGu- -3'
miRNA:   3'- -CGCUGu-----CGCUGGACGAcuaGCUGUug -5'
16405 5' -53 NC_004084.1 + 57531 0.69 0.680521
Target:  5'- cCGACAGCGAuaccgauuCCgacgGCgacGUCGACGACu -3'
miRNA:   3'- cGCUGUCGCU--------GGa---CGac-UAGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 56982 0.66 0.843207
Target:  5'- aGCGAaggaGGCGGCCgag-GA-CGGCGACg -3'
miRNA:   3'- -CGCUg---UCGCUGGacgaCUaGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 55968 0.76 0.310604
Target:  5'- aCGACGGCGACgCggagggGCUGAUCGcCGAUg -3'
miRNA:   3'- cGCUGUCGCUG-Ga-----CGACUAGCuGUUG- -5'
16405 5' -53 NC_004084.1 + 55268 0.68 0.734913
Target:  5'- aCGGuCGGCGGCgUGUaGAUCGuCAGCu -3'
miRNA:   3'- cGCU-GUCGCUGgACGaCUAGCuGUUG- -5'
16405 5' -53 NC_004084.1 + 51313 0.76 0.302909
Target:  5'- -aGACGGCGACCgagGC-GAUCGAguGCg -3'
miRNA:   3'- cgCUGUCGCUGGa--CGaCUAGCUguUG- -5'
16405 5' -53 NC_004084.1 + 49631 0.67 0.780637
Target:  5'- aCGACAuGUgGACCUGCucgagcugugggcggUGGUCGACAu- -3'
miRNA:   3'- cGCUGU-CG-CUGGACG---------------ACUAGCUGUug -5'
16405 5' -53 NC_004084.1 + 48348 0.66 0.814876
Target:  5'- aCGGCGGCGAUCaacGCUGGuucccggucgagaUCGuCAACg -3'
miRNA:   3'- cGCUGUCGCUGGa--CGACU-------------AGCuGUUG- -5'
16405 5' -53 NC_004084.1 + 47863 0.67 0.777605
Target:  5'- uCGACAGCcACCccgagcuacucguccGCUGGcUCGGCAACg -3'
miRNA:   3'- cGCUGUCGcUGGa--------------CGACU-AGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 47390 0.66 0.843207
Target:  5'- uCGACGGCGAgCUcCaggGcgCGACGACg -3'
miRNA:   3'- cGCUGUCGCUgGAcGa--CuaGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 46812 0.67 0.776592
Target:  5'- aGCaACGucGCGACCUGCgacaacugCGGCGACa -3'
miRNA:   3'- -CGcUGU--CGCUGGACGacua----GCUGUUG- -5'
16405 5' -53 NC_004084.1 + 45728 0.66 0.860343
Target:  5'- cCGAC-GCGG--UGCUGGUCGGCuACg -3'
miRNA:   3'- cGCUGuCGCUggACGACUAGCUGuUG- -5'
16405 5' -53 NC_004084.1 + 44911 0.68 0.745521
Target:  5'- gGCGACGacccGCG-CCUaGCUGAggUGACGAUg -3'
miRNA:   3'- -CGCUGU----CGCuGGA-CGACUa-GCUGUUG- -5'
16405 5' -53 NC_004084.1 + 42725 0.66 0.815821
Target:  5'- cGCGuCGGCGA---GUUGAUCGGCuGCg -3'
miRNA:   3'- -CGCuGUCGCUggaCGACUAGCUGuUG- -5'
16405 5' -53 NC_004084.1 + 41993 0.66 0.843207
Target:  5'- cCGGCAGCGuuC-GCUGAcgCGACGGa -3'
miRNA:   3'- cGCUGUCGCugGaCGACUa-GCUGUUg -5'
16405 5' -53 NC_004084.1 + 41910 0.71 0.58052
Target:  5'- cGCGGCGcGCGaucGCCUGCUGuggCGAUAu- -3'
miRNA:   3'- -CGCUGU-CGC---UGGACGACua-GCUGUug -5'
16405 5' -53 NC_004084.1 + 40686 0.66 0.851893
Target:  5'- cGCGG-AGCcgagGACgaGCUGAUCGACugauGCc -3'
miRNA:   3'- -CGCUgUCG----CUGgaCGACUAGCUGu---UG- -5'
16405 5' -53 NC_004084.1 + 40132 0.66 0.843207
Target:  5'- cCGACGGUGGCC---UGAUCGGCcucAACg -3'
miRNA:   3'- cGCUGUCGCUGGacgACUAGCUG---UUG- -5'
16405 5' -53 NC_004084.1 + 39714 0.66 0.825161
Target:  5'- aGUGACGGCGACgacGCc-GUCGACGAg -3'
miRNA:   3'- -CGCUGUCGCUGga-CGacUAGCUGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.