Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16405 | 5' | -53 | NC_004084.1 | + | 39318 | 0.67 | 0.776592 |
Target: 5'- aCGGUAGCcGCCgcggUGCUGAUCGACGu- -3' miRNA: 3'- cGCUGUCGcUGG----ACGACUAGCUGUug -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 35516 | 0.7 | 0.647225 |
Target: 5'- cGCGAguGgGAcauCCUGCgcgUGAUCGAgGACc -3' miRNA: 3'- -CGCUguCgCU---GGACG---ACUAGCUgUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 35287 | 0.72 | 0.494271 |
Target: 5'- gGCGAaguCAGCGcgagaGCCUGCUGAcguUCGuCGGCu -3' miRNA: 3'- -CGCU---GUCGC-----UGGACGACU---AGCuGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 33107 | 0.71 | 0.536797 |
Target: 5'- cGCGACGGCGGCCU-CUG--CGGCuACu -3' miRNA: 3'- -CGCUGUCGCUGGAcGACuaGCUGuUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 29989 | 0.68 | 0.745521 |
Target: 5'- cCGGCGuCGACCUggucGCUGGU-GACGACg -3' miRNA: 3'- cGCUGUcGCUGGA----CGACUAgCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 28927 | 0.71 | 0.569503 |
Target: 5'- aGCGACGuCGGCCUcgggaGCgcGUCGACAGCg -3' miRNA: 3'- -CGCUGUcGCUGGA-----CGacUAGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 26945 | 0.71 | 0.562917 |
Target: 5'- cGCGGCGgacGCGcucaccgcauccauuGCCcGCUGGUCGACAGa -3' miRNA: 3'- -CGCUGU---CGC---------------UGGaCGACUAGCUGUUg -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 26282 | 0.73 | 0.443407 |
Target: 5'- uGCGACGGgacgcaguCGACCUcCUGGugcUCGACGACg -3' miRNA: 3'- -CGCUGUC--------GCUGGAcGACU---AGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 25103 | 0.7 | 0.636084 |
Target: 5'- cGCGGCGGCGGCaggUGUUGA-CGcuCAACg -3' miRNA: 3'- -CGCUGUCGCUGg--ACGACUaGCu-GUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 24399 | 0.67 | 0.806283 |
Target: 5'- gGgGGCAGCGuaGCgUGCgauuaccuUCGACAACg -3' miRNA: 3'- -CgCUGUCGC--UGgACGacu-----AGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 23358 | 0.72 | 0.492184 |
Target: 5'- aCGAUGGCGACCgccugccgguaucagGCgaucaucgaugagaUGAUCGACGACg -3' miRNA: 3'- cGCUGUCGCUGGa--------------CG--------------ACUAGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 23076 | 0.69 | 0.658353 |
Target: 5'- gGCGAC-GCGACgaGgUGGacgUCGGCGACc -3' miRNA: 3'- -CGCUGuCGCUGgaCgACU---AGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 22977 | 0.67 | 0.796558 |
Target: 5'- cCGACcgaguccuGGuCGACCUcGCgagcgaGAUCGACGACg -3' miRNA: 3'- cGCUG--------UC-GCUGGA-CGa-----CUAGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 22434 | 0.66 | 0.860343 |
Target: 5'- cGCGGuCGGaGACgaGCUGAUCGAg--- -3' miRNA: 3'- -CGCU-GUCgCUGgaCGACUAGCUguug -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 19351 | 1.13 | 0.000951 |
Target: 5'- cGCGACAGCGACCUGCUGAUCGACAACg -3' miRNA: 3'- -CGCUGUCGCUGGACGACUAGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 16883 | 0.69 | 0.658353 |
Target: 5'- aGCG-CGGCG-UCUGCUccGAUCGACGc- -3' miRNA: 3'- -CGCuGUCGCuGGACGA--CUAGCUGUug -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 15520 | 0.68 | 0.734913 |
Target: 5'- cGCGGCAGCuuGGCucucaCUGCagguaUGAUgGACGACg -3' miRNA: 3'- -CGCUGUCG--CUG-----GACG-----ACUAgCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 14109 | 0.66 | 0.860343 |
Target: 5'- gGCGGCAGUguccGACCUGC--GUCu-CAGCg -3' miRNA: 3'- -CGCUGUCG----CUGGACGacUAGcuGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 12196 | 0.76 | 0.318446 |
Target: 5'- --aGCGGCGACCUGaugaUGAUCGuCGACg -3' miRNA: 3'- cgcUGUCGCUGGACg---ACUAGCuGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 11930 | 0.66 | 0.825161 |
Target: 5'- gGCGACGucGCGACCaGCgagGAcUCGAUcgAGCu -3' miRNA: 3'- -CGCUGU--CGCUGGaCGa--CU-AGCUG--UUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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