Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16405 | 5' | -53 | NC_004084.1 | + | 7388 | 0.71 | 0.569503 |
Target: 5'- aGCGACcGCaucGACgaGCUGAgcaaggcgaUCGACGACg -3' miRNA: 3'- -CGCUGuCG---CUGgaCGACU---------AGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 26945 | 0.71 | 0.562917 |
Target: 5'- cGCGGCGgacGCGcucaccgcauccauuGCCcGCUGGUCGACAGa -3' miRNA: 3'- -CGCUGU---CGC---------------UGGaCGACUAGCUGUUg -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 35287 | 0.72 | 0.494271 |
Target: 5'- gGCGAaguCAGCGcgagaGCCUGCUGAcguUCGuCGGCu -3' miRNA: 3'- -CGCU---GUCGC-----UGGACGACU---AGCuGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 23358 | 0.72 | 0.492184 |
Target: 5'- aCGAUGGCGACCgccugccgguaucagGCgaucaucgaugagaUGAUCGACGACg -3' miRNA: 3'- cGCUGUCGCUGGa--------------CG--------------ACUAGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 12196 | 0.76 | 0.318446 |
Target: 5'- --aGCGGCGACCUGaugaUGAUCGuCGACg -3' miRNA: 3'- cgcUGUCGCUGGACg---ACUAGCuGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 55968 | 0.76 | 0.310604 |
Target: 5'- aCGACGGCGACgCggagggGCUGAUCGcCGAUg -3' miRNA: 3'- cGCUGUCGCUG-Ga-----CGACUAGCuGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 51313 | 0.76 | 0.302909 |
Target: 5'- -aGACGGCGACCgagGC-GAUCGAguGCg -3' miRNA: 3'- cgCUGUCGCUGGa--CGaCUAGCUguUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 19351 | 1.13 | 0.000951 |
Target: 5'- cGCGACAGCGACCUGCUGAUCGACAACg -3' miRNA: 3'- -CGCUGUCGCUGGACGACUAGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 28927 | 0.71 | 0.569503 |
Target: 5'- aGCGACGuCGGCCUcgggaGCgcGUCGACAGCg -3' miRNA: 3'- -CGCUGUcGCUGGA-----CGacUAGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 10592 | 0.71 | 0.57721 |
Target: 5'- aCGAUccgGGCGAaagguucggauacaCC-GCUGAUCGACAACu -3' miRNA: 3'- cGCUG---UCGCU--------------GGaCGACUAGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 57531 | 0.69 | 0.680521 |
Target: 5'- cCGACAGCGAuaccgauuCCgacgGCgacGUCGACGACu -3' miRNA: 3'- cGCUGUCGCU--------GGa---CGac-UAGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 10298 | 0.69 | 0.666128 |
Target: 5'- cGUGACGaCGACCggccgcaacuacguUGCUGGccucugguUCGACAGCa -3' miRNA: 3'- -CGCUGUcGCUGG--------------ACGACU--------AGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 5444 | 0.69 | 0.658353 |
Target: 5'- cGCGAuCGGCGACCaGCgcacucgCGACGAUc -3' miRNA: 3'- -CGCU-GUCGCUGGaCGacua---GCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 16883 | 0.69 | 0.658353 |
Target: 5'- aGCG-CGGCG-UCUGCUccGAUCGACGc- -3' miRNA: 3'- -CGCuGUCGCuGGACGA--CUAGCUGUug -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 35516 | 0.7 | 0.647225 |
Target: 5'- cGCGAguGgGAcauCCUGCgcgUGAUCGAgGACc -3' miRNA: 3'- -CGCUguCgCU---GGACG---ACUAGCUgUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 25103 | 0.7 | 0.636084 |
Target: 5'- cGCGGCGGCGGCaggUGUUGA-CGcuCAACg -3' miRNA: 3'- -CGCUGUCGCUGg--ACGACUaGCu-GUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 58002 | 0.7 | 0.636084 |
Target: 5'- aCGAguGCGACgUcCaGAUCGACGACg -3' miRNA: 3'- cGCUguCGCUGgAcGaCUAGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 41910 | 0.71 | 0.58052 |
Target: 5'- cGCGGCGcGCGaucGCCUGCUGuggCGAUAu- -3' miRNA: 3'- -CGCUGU-CGC---UGGACGACua-GCUGUug -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 26282 | 0.73 | 0.443407 |
Target: 5'- uGCGACGGgacgcaguCGACCUcCUGGugcUCGACGACg -3' miRNA: 3'- -CGCUGUC--------GCUGGAcGACU---AGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 3200 | 0.66 | 0.851893 |
Target: 5'- cCGAgAGCGAUCUGCgGGuguaccgugUCGGCcACg -3' miRNA: 3'- cGCUgUCGCUGGACGaCU---------AGCUGuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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