miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16405 5' -53 NC_004084.1 + 910 0.68 0.734913
Target:  5'- gGCGucgucggaguucGCuGCGGCCUGCUGGU-GACGc- -3'
miRNA:   3'- -CGC------------UGuCGCUGGACGACUAgCUGUug -5'
16405 5' -53 NC_004084.1 + 55268 0.68 0.734913
Target:  5'- aCGGuCGGCGGCgUGUaGAUCGuCAGCu -3'
miRNA:   3'- cGCU-GUCGCUGgACGaCUAGCuGUUG- -5'
16405 5' -53 NC_004084.1 + 23076 0.69 0.658353
Target:  5'- gGCGAC-GCGACgaGgUGGacgUCGGCGACc -3'
miRNA:   3'- -CGCUGuCGCUGgaCgACU---AGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 33107 0.71 0.536797
Target:  5'- cGCGACGGCGGCCU-CUG--CGGCuACu -3'
miRNA:   3'- -CGCUGUCGCUGGAcGACuaGCUGuUG- -5'
16405 5' -53 NC_004084.1 + 39318 0.67 0.776592
Target:  5'- aCGGUAGCcGCCgcggUGCUGAUCGACGu- -3'
miRNA:   3'- cGCUGUCGcUGG----ACGACUAGCUGUug -5'
16405 5' -53 NC_004084.1 + 4807 0.67 0.796558
Target:  5'- aGCGGCAGagaaGGCggGCcgGAUCGGCGGg -3'
miRNA:   3'- -CGCUGUCg---CUGgaCGa-CUAGCUGUUg -5'
16405 5' -53 NC_004084.1 + 57735 0.67 0.796558
Target:  5'- cGCGACucacccGCGGCCUGCUcg-UGGCGu- -3'
miRNA:   3'- -CGCUGu-----CGCUGGACGAcuaGCUGUug -5'
16405 5' -53 NC_004084.1 + 24399 0.67 0.806283
Target:  5'- gGgGGCAGCGuaGCgUGCgauuaccuUCGACAACg -3'
miRNA:   3'- -CgCUGUCGC--UGgACGacu-----AGCUGUUG- -5'
16405 5' -53 NC_004084.1 + 4280 0.66 0.815821
Target:  5'- cGCGaACGGCGuCaggUGCUGGaagcCGACGGCg -3'
miRNA:   3'- -CGC-UGUCGCuGg--ACGACUa---GCUGUUG- -5'
16405 5' -53 NC_004084.1 + 42725 0.66 0.815821
Target:  5'- cGCGuCGGCGA---GUUGAUCGGCuGCg -3'
miRNA:   3'- -CGCuGUCGCUggaCGACUAGCUGuUG- -5'
16405 5' -53 NC_004084.1 + 40686 0.66 0.851893
Target:  5'- cGCGG-AGCcgagGACgaGCUGAUCGACugauGCc -3'
miRNA:   3'- -CGCUgUCG----CUGgaCGACUAGCUGu---UG- -5'
16405 5' -53 NC_004084.1 + 3200 0.66 0.851893
Target:  5'- cCGAgAGCGAUCUGCgGGuguaccgugUCGGCcACg -3'
miRNA:   3'- cGCUgUCGCUGGACGaCU---------AGCUGuUG- -5'
16405 5' -53 NC_004084.1 + 14109 0.66 0.860343
Target:  5'- gGCGGCAGUguccGACCUGC--GUCu-CAGCg -3'
miRNA:   3'- -CGCUGUCG----CUGGACGacUAGcuGUUG- -5'
16405 5' -53 NC_004084.1 + 26282 0.73 0.443407
Target:  5'- uGCGACGGgacgcaguCGACCUcCUGGugcUCGACGACg -3'
miRNA:   3'- -CGCUGUC--------GCUGGAcGACU---AGCUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.