Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16405 | 5' | -53 | NC_004084.1 | + | 14109 | 0.66 | 0.860343 |
Target: 5'- gGCGGCAGUguccGACCUGC--GUCu-CAGCg -3' miRNA: 3'- -CGCUGUCG----CUGGACGacUAGcuGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 910 | 0.68 | 0.734913 |
Target: 5'- gGCGucgucggaguucGCuGCGGCCUGCUGGU-GACGc- -3' miRNA: 3'- -CGC------------UGuCGCUGGACGACUAgCUGUug -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 39318 | 0.67 | 0.776592 |
Target: 5'- aCGGUAGCcGCCgcggUGCUGAUCGACGu- -3' miRNA: 3'- cGCUGUCGcUGG----ACGACUAGCUGUug -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 4807 | 0.67 | 0.796558 |
Target: 5'- aGCGGCAGagaaGGCggGCcgGAUCGGCGGg -3' miRNA: 3'- -CGCUGUCg---CUGgaCGa-CUAGCUGUUg -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 24399 | 0.67 | 0.806283 |
Target: 5'- gGgGGCAGCGuaGCgUGCgauuaccuUCGACAACg -3' miRNA: 3'- -CgCUGUCGC--UGgACGacu-----AGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 4280 | 0.66 | 0.815821 |
Target: 5'- cGCGaACGGCGuCaggUGCUGGaagcCGACGGCg -3' miRNA: 3'- -CGC-UGUCGCuGg--ACGACUa---GCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 23076 | 0.69 | 0.658353 |
Target: 5'- gGCGAC-GCGACgaGgUGGacgUCGGCGACc -3' miRNA: 3'- -CGCUGuCGCUGgaCgACU---AGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 29989 | 0.68 | 0.745521 |
Target: 5'- cCGGCGuCGACCUggucGCUGGU-GACGACg -3' miRNA: 3'- cGCUGUcGCUGGA----CGACUAgCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 57735 | 0.67 | 0.796558 |
Target: 5'- cGCGACucacccGCGGCCUGCUcg-UGGCGu- -3' miRNA: 3'- -CGCUGu-----CGCUGGACGAcuaGCUGUug -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 42725 | 0.66 | 0.815821 |
Target: 5'- cGCGuCGGCGA---GUUGAUCGGCuGCg -3' miRNA: 3'- -CGCuGUCGCUggaCGACUAGCUGuUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 3200 | 0.66 | 0.851893 |
Target: 5'- cCGAgAGCGAUCUGCgGGuguaccgugUCGGCcACg -3' miRNA: 3'- cGCUgUCGCUGGACGaCU---------AGCUGuUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 33107 | 0.71 | 0.536797 |
Target: 5'- cGCGACGGCGGCCU-CUG--CGGCuACu -3' miRNA: 3'- -CGCUGUCGCUGGAcGACuaGCUGuUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 40686 | 0.66 | 0.851893 |
Target: 5'- cGCGG-AGCcgagGACgaGCUGAUCGACugauGCc -3' miRNA: 3'- -CGCUgUCG----CUGgaCGACUAGCUGu---UG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 11055 | 0.67 | 0.775576 |
Target: 5'- cGCGGacgaaggGGCGGCCgccgacgaacaugUGCUugaGGUCGGCGACg -3' miRNA: 3'- -CGCUg------UCGCUGG-------------ACGA---CUAGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 26282 | 0.73 | 0.443407 |
Target: 5'- uGCGACGGgacgcaguCGACCUcCUGGugcUCGACGACg -3' miRNA: 3'- -CGCUGUC--------GCUGGAcGACU---AGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 55268 | 0.68 | 0.734913 |
Target: 5'- aCGGuCGGCGGCgUGUaGAUCGuCAGCu -3' miRNA: 3'- cGCU-GUCGCUGgACGaCUAGCuGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 16883 | 0.69 | 0.658353 |
Target: 5'- aGCG-CGGCG-UCUGCUccGAUCGACGc- -3' miRNA: 3'- -CGCuGUCGCuGGACGA--CUAGCUGUug -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 35516 | 0.7 | 0.647225 |
Target: 5'- cGCGAguGgGAcauCCUGCgcgUGAUCGAgGACc -3' miRNA: 3'- -CGCUguCgCU---GGACG---ACUAGCUgUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 25103 | 0.7 | 0.636084 |
Target: 5'- cGCGGCGGCGGCaggUGUUGA-CGcuCAACg -3' miRNA: 3'- -CGCUGUCGCUGg--ACGACUaGCu-GUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 58002 | 0.7 | 0.636084 |
Target: 5'- aCGAguGCGACgUcCaGAUCGACGACg -3' miRNA: 3'- cGCUguCGCUGgAcGaCUAGCUGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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