Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16405 | 5' | -53 | NC_004084.1 | + | 40132 | 0.66 | 0.843207 |
Target: 5'- cCGACGGUGGCC---UGAUCGGCcucAACg -3' miRNA: 3'- cGCUGUCGCUGGacgACUAGCUG---UUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 45728 | 0.66 | 0.860343 |
Target: 5'- cCGAC-GCGG--UGCUGGUCGGCuACg -3' miRNA: 3'- cGCUGuCGCUggACGACUAGCUGuUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 35287 | 0.72 | 0.494271 |
Target: 5'- gGCGAaguCAGCGcgagaGCCUGCUGAcguUCGuCGGCu -3' miRNA: 3'- -CGCU---GUCGC-----UGGACGACU---AGCuGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 22434 | 0.66 | 0.860343 |
Target: 5'- cGCGGuCGGaGACgaGCUGAUCGAg--- -3' miRNA: 3'- -CGCU-GUCgCUGgaCGACUAGCUguug -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 22977 | 0.67 | 0.796558 |
Target: 5'- cCGACcgaguccuGGuCGACCUcGCgagcgaGAUCGACGACg -3' miRNA: 3'- cGCUG--------UC-GCUGGA-CGa-----CUAGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 49631 | 0.67 | 0.780637 |
Target: 5'- aCGACAuGUgGACCUGCucgagcugugggcggUGGUCGACAu- -3' miRNA: 3'- cGCUGU-CG-CUGGACG---------------ACUAGCUGUug -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 23358 | 0.72 | 0.492184 |
Target: 5'- aCGAUGGCGACCgccugccgguaucagGCgaucaucgaugagaUGAUCGACGACg -3' miRNA: 3'- cGCUGUCGCUGGa--------------CG--------------ACUAGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 26945 | 0.71 | 0.562917 |
Target: 5'- cGCGGCGgacGCGcucaccgcauccauuGCCcGCUGGUCGACAGa -3' miRNA: 3'- -CGCUGU---CGC---------------UGGaCGACUAGCUGUUg -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 10592 | 0.71 | 0.57721 |
Target: 5'- aCGAUccgGGCGAaagguucggauacaCC-GCUGAUCGACAACu -3' miRNA: 3'- cGCUG---UCGCU--------------GGaCGACUAGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 41910 | 0.71 | 0.58052 |
Target: 5'- cGCGGCGcGCGaucGCCUGCUGuggCGAUAu- -3' miRNA: 3'- -CGCUGU-CGC---UGGACGACua-GCUGUug -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 58002 | 0.7 | 0.636084 |
Target: 5'- aCGAguGCGACgUcCaGAUCGACGACg -3' miRNA: 3'- cGCUguCGCUGgAcGaCUAGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 25103 | 0.7 | 0.636084 |
Target: 5'- cGCGGCGGCGGCaggUGUUGA-CGcuCAACg -3' miRNA: 3'- -CGCUGUCGCUGg--ACGACUaGCu-GUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 35516 | 0.7 | 0.647225 |
Target: 5'- cGCGAguGgGAcauCCUGCgcgUGAUCGAgGACc -3' miRNA: 3'- -CGCUguCgCU---GGACG---ACUAGCUgUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 16883 | 0.69 | 0.658353 |
Target: 5'- aGCG-CGGCG-UCUGCUccGAUCGACGc- -3' miRNA: 3'- -CGCuGUCGCuGGACGA--CUAGCUGUug -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 7461 | 0.69 | 0.680521 |
Target: 5'- cCGACGGCGACUcgaGCgg--CGACGGCg -3' miRNA: 3'- cGCUGUCGCUGGa--CGacuaGCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 8618 | 0.69 | 0.702501 |
Target: 5'- gGCGACGaCGACUUcGC-GAUCGAgAACa -3' miRNA: 3'- -CGCUGUcGCUGGA-CGaCUAGCUgUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 15520 | 0.68 | 0.734913 |
Target: 5'- cGCGGCAGCuuGGCucucaCUGCagguaUGAUgGACGACg -3' miRNA: 3'- -CGCUGUCG--CUG-----GACG-----ACUAgCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 44911 | 0.68 | 0.745521 |
Target: 5'- gGCGACGacccGCG-CCUaGCUGAggUGACGAUg -3' miRNA: 3'- -CGCUGU----CGCuGGA-CGACUa-GCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 46812 | 0.67 | 0.776592 |
Target: 5'- aGCaACGucGCGACCUGCgacaacugCGGCGACa -3' miRNA: 3'- -CGcUGU--CGCUGGACGacua----GCUGUUG- -5' |
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16405 | 5' | -53 | NC_004084.1 | + | 47863 | 0.67 | 0.777605 |
Target: 5'- uCGACAGCcACCccgagcuacucguccGCUGGcUCGGCAACg -3' miRNA: 3'- cGCUGUCGcUGGa--------------CGACU-AGCUGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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