Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16406 | 3' | -56.2 | NC_004084.1 | + | 19559 | 1.1 | 0.000857 |
Target: 5'- aACUCUGGCUCGACGAGGACGACGUCCc -3' miRNA: 3'- -UGAGACCGAGCUGCUCCUGCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 19635 | 0.82 | 0.080813 |
Target: 5'- gUUCcGGCUCGACGAcGAUGGCGUCCa -3' miRNA: 3'- uGAGaCCGAGCUGCUcCUGCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 23070 | 0.77 | 0.173839 |
Target: 5'- -gUCgccGGCgacgCGACGAGGugGACGUCg -3' miRNA: 3'- ugAGa--CCGa---GCUGCUCCugCUGCAGg -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 30418 | 0.75 | 0.252379 |
Target: 5'- -gUCgacgGGCggcgacggaagcgaUGGCGAGGACGACGUCCc -3' miRNA: 3'- ugAGa---CCGa-------------GCUGCUCCUGCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 56914 | 0.74 | 0.269347 |
Target: 5'- -aUC-GGCuUCGAgcuCGAGGGCGACGUCUa -3' miRNA: 3'- ugAGaCCG-AGCU---GCUCCUGCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 937 | 0.74 | 0.304539 |
Target: 5'- cCUCUGGCUCGAcaaguucgacucCGGGGACcGCaUCCu -3' miRNA: 3'- uGAGACCGAGCU------------GCUCCUGcUGcAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 47260 | 0.72 | 0.359563 |
Target: 5'- ----cGGCUCGccggcgccuacuACGAGGucgACGACGUCCa -3' miRNA: 3'- ugagaCCGAGC------------UGCUCC---UGCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 29219 | 0.72 | 0.385181 |
Target: 5'- cGCUCUGGaacaUCGACGccgagcAGGGCGAguUCCg -3' miRNA: 3'- -UGAGACCg---AGCUGC------UCCUGCUgcAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 1215 | 0.71 | 0.402917 |
Target: 5'- cGCUggCUGGCUCGGCggcgggaucGAGGGCGaucGCGcCCa -3' miRNA: 3'- -UGA--GACCGAGCUG---------CUCCUGC---UGCaGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 18553 | 0.71 | 0.439897 |
Target: 5'- aACUCgggugGGC-CGACGGGGagaucGCGACGgUCUg -3' miRNA: 3'- -UGAGa----CCGaGCUGCUCC-----UGCUGC-AGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 6236 | 0.7 | 0.446566 |
Target: 5'- aACUCgucuaGGUgaucgagcgguucgUCGACGuGGuCGGCGUCCa -3' miRNA: 3'- -UGAGa----CCG--------------AGCUGCuCCuGCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 35323 | 0.7 | 0.449441 |
Target: 5'- --gCUGGCUaucCGAGGucgcCGACGUCCa -3' miRNA: 3'- ugaGACCGAgcuGCUCCu---GCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 1658 | 0.7 | 0.45329 |
Target: 5'- cGCUCgucaucaugGGCUCGuCGGGcGACcugaucgacgcgaagGACGUCCg -3' miRNA: 3'- -UGAGa--------CCGAGCuGCUC-CUG---------------CUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 12925 | 0.7 | 0.459098 |
Target: 5'- --aCUGGg-CGACGAuGACGACGUCUu -3' miRNA: 3'- ugaGACCgaGCUGCUcCUGCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 12960 | 0.7 | 0.459098 |
Target: 5'- gGCUC-GGCuUCGAucCGcGGGCGGCGUCa -3' miRNA: 3'- -UGAGaCCG-AGCU--GCuCCUGCUGCAGg -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 21470 | 0.7 | 0.488708 |
Target: 5'- ----cGGCUCGcccuCGAGGGCGGCGaucgCCu -3' miRNA: 3'- ugagaCCGAGCu---GCUCCUGCUGCa---GG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 7413 | 0.7 | 0.498777 |
Target: 5'- ----aGGCgaucgaCGACGAGGGCGAUG-CCg -3' miRNA: 3'- ugagaCCGa-----GCUGCUCCUGCUGCaGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 44928 | 0.69 | 0.5161 |
Target: 5'- aGCUgaGGUgacgaugacguucgUCGACGAGaACGGCGUUCg -3' miRNA: 3'- -UGAgaCCG--------------AGCUGCUCcUGCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 27486 | 0.69 | 0.519183 |
Target: 5'- aGCUCgacgUCGACGAGGcgauCGACGUCUu -3' miRNA: 3'- -UGAGaccgAGCUGCUCCu---GCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 4928 | 0.69 | 0.519183 |
Target: 5'- gACUUc-GCcgUCGACGuacuGGAUGACGUCCg -3' miRNA: 3'- -UGAGacCG--AGCUGCu---CCUGCUGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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