Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16406 | 3' | -56.2 | NC_004084.1 | + | 21393 | 0.69 | 0.519183 |
Target: 5'- aGCUCgGGCaUGAUccGGuCGACGUCCa -3' miRNA: 3'- -UGAGaCCGaGCUGcuCCuGCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 53246 | 0.69 | 0.523304 |
Target: 5'- aGCg--GGCggucgUCGACGGcgacgagaucgggccGGGCGACGUCCu -3' miRNA: 3'- -UGagaCCG-----AGCUGCU---------------CCUGCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 1846 | 0.69 | 0.52951 |
Target: 5'- -gUgUGGCUCcugcagcGCGAcGGACGACGUCg -3' miRNA: 3'- ugAgACCGAGc------UGCU-CCUGCUGCAGg -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 32391 | 0.68 | 0.603506 |
Target: 5'- aGCUCgGGCUCGA--AGGcuACGACaacaGUCCg -3' miRNA: 3'- -UGAGaCCGAGCUgcUCC--UGCUG----CAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 58081 | 0.68 | 0.603506 |
Target: 5'- cAC-CUGGCUcaaCGACGAGuuCGGCGgCCu -3' miRNA: 3'- -UGaGACCGA---GCUGCUCcuGCUGCaGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 39719 | 0.68 | 0.614234 |
Target: 5'- ----cGGCgacgacgccgUCGACGAGGAUGACGaggaggacUCCg -3' miRNA: 3'- ugagaCCG----------AGCUGCUCCUGCUGC--------AGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 27626 | 0.67 | 0.621752 |
Target: 5'- -aUCUGGUUCGACGcagaagugaucgagGGGAUGcCG-CCg -3' miRNA: 3'- ugAGACCGAGCUGC--------------UCCUGCuGCaGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 10331 | 0.67 | 0.624976 |
Target: 5'- cCUCUGGUUCGACagcaugucgGAGGAgaaGGuCGUUCg -3' miRNA: 3'- uGAGACCGAGCUG---------CUCCUg--CU-GCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 49376 | 0.67 | 0.624976 |
Target: 5'- gACUCUacccGCUCGAUGcGGGAuucguagucguCGugGUCCu -3' miRNA: 3'- -UGAGAc---CGAGCUGC-UCCU-----------GCugCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 17441 | 0.67 | 0.63465 |
Target: 5'- aACUCgucgGGUucguccgggaucgUCGACG-GGaucaacucguucGCGACGUCCg -3' miRNA: 3'- -UGAGa---CCG-------------AGCUGCuCC------------UGCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 50246 | 0.67 | 0.636799 |
Target: 5'- cCUCUGcGUccucgucgccguuggCGGCGAGGuccuCGACGUCUg -3' miRNA: 3'- uGAGAC-CGa--------------GCUGCUCCu---GCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 11666 | 0.67 | 0.64647 |
Target: 5'- -gUC-GGCgacgacuaCGGCGAGGacaGCGACGUCUa -3' miRNA: 3'- ugAGaCCGa-------GCUGCUCC---UGCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 34843 | 0.67 | 0.64647 |
Target: 5'- -aUCUGGCUCucgacgacaGCGGGGagcGCGAuauCGUCCg -3' miRNA: 3'- ugAGACCGAGc--------UGCUCC---UGCU---GCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 2303 | 0.67 | 0.64647 |
Target: 5'- cACUgcGGCgcacgacgUCGACGAGGACGAUGa-- -3' miRNA: 3'- -UGAgaCCG--------AGCUGCUCCUGCUGCagg -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 18128 | 0.67 | 0.64647 |
Target: 5'- -gUCcGGCUCGGCccGGAUGGaGUCCg -3' miRNA: 3'- ugAGaCCGAGCUGcuCCUGCUgCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 56286 | 0.67 | 0.657203 |
Target: 5'- -gUCUGGUgaccUCGGuggaaGAGGAUG-CGUCCg -3' miRNA: 3'- ugAGACCG----AGCUg----CUCCUGCuGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 1770 | 0.67 | 0.657203 |
Target: 5'- aGCgg-GGCcUGGCGAGGugGuCGUUCu -3' miRNA: 3'- -UGagaCCGaGCUGCUCCugCuGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 39237 | 0.67 | 0.678592 |
Target: 5'- -aUC-GGCgUCGAUGGGGAUcaGCGUCCc -3' miRNA: 3'- ugAGaCCG-AGCUGCUCCUGc-UGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 39605 | 0.67 | 0.678592 |
Target: 5'- cCUcCUGGa-CGugGccGGCGACGUCCu -3' miRNA: 3'- uGA-GACCgaGCugCucCUGCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 7451 | 0.67 | 0.680723 |
Target: 5'- aACUCUcucaGGCUCGuuucguccucguCGAGGAggagaucagggucguCGACGUCg -3' miRNA: 3'- -UGAGA----CCGAGCu-----------GCUCCU---------------GCUGCAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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