miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16406 3' -56.2 NC_004084.1 + 39237 0.67 0.678592
Target:  5'- -aUC-GGCgUCGAUGGGGAUcaGCGUCCc -3'
miRNA:   3'- ugAGaCCG-AGCUGCUCCUGc-UGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 39605 0.67 0.678592
Target:  5'- cCUcCUGGa-CGugGccGGCGACGUCCu -3'
miRNA:   3'- uGA-GACCgaGCugCucCUGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 56286 0.67 0.657203
Target:  5'- -gUCUGGUgaccUCGGuggaaGAGGAUG-CGUCCg -3'
miRNA:   3'- ugAGACCG----AGCUg----CUCCUGCuGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 1770 0.67 0.657203
Target:  5'- aGCgg-GGCcUGGCGAGGugGuCGUUCu -3'
miRNA:   3'- -UGagaCCGaGCUGCUCCugCuGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 34843 0.67 0.64647
Target:  5'- -aUCUGGCUCucgacgacaGCGGGGagcGCGAuauCGUCCg -3'
miRNA:   3'- ugAGACCGAGc--------UGCUCC---UGCU---GCAGG- -5'
16406 3' -56.2 NC_004084.1 + 18128 0.67 0.64647
Target:  5'- -gUCcGGCUCGGCccGGAUGGaGUCCg -3'
miRNA:   3'- ugAGaCCGAGCUGcuCCUGCUgCAGG- -5'
16406 3' -56.2 NC_004084.1 + 11666 0.67 0.64647
Target:  5'- -gUC-GGCgacgacuaCGGCGAGGacaGCGACGUCUa -3'
miRNA:   3'- ugAGaCCGa-------GCUGCUCC---UGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 2303 0.67 0.64647
Target:  5'- cACUgcGGCgcacgacgUCGACGAGGACGAUGa-- -3'
miRNA:   3'- -UGAgaCCG--------AGCUGCUCCUGCUGCagg -5'
16406 3' -56.2 NC_004084.1 + 50246 0.67 0.636799
Target:  5'- cCUCUGcGUccucgucgccguuggCGGCGAGGuccuCGACGUCUg -3'
miRNA:   3'- uGAGAC-CGa--------------GCUGCUCCu---GCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 17441 0.67 0.63465
Target:  5'- aACUCgucgGGUucguccgggaucgUCGACG-GGaucaacucguucGCGACGUCCg -3'
miRNA:   3'- -UGAGa---CCG-------------AGCUGCuCC------------UGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 10331 0.67 0.624976
Target:  5'- cCUCUGGUUCGACagcaugucgGAGGAgaaGGuCGUUCg -3'
miRNA:   3'- uGAGACCGAGCUG---------CUCCUg--CU-GCAGG- -5'
16406 3' -56.2 NC_004084.1 + 49376 0.67 0.624976
Target:  5'- gACUCUacccGCUCGAUGcGGGAuucguagucguCGugGUCCu -3'
miRNA:   3'- -UGAGAc---CGAGCUGC-UCCU-----------GCugCAGG- -5'
16406 3' -56.2 NC_004084.1 + 27626 0.67 0.621752
Target:  5'- -aUCUGGUUCGACGcagaagugaucgagGGGAUGcCG-CCg -3'
miRNA:   3'- ugAGACCGAGCUGC--------------UCCUGCuGCaGG- -5'
16406 3' -56.2 NC_004084.1 + 39719 0.68 0.614234
Target:  5'- ----cGGCgacgacgccgUCGACGAGGAUGACGaggaggacUCCg -3'
miRNA:   3'- ugagaCCG----------AGCUGCUCCUGCUGC--------AGG- -5'
16406 3' -56.2 NC_004084.1 + 58081 0.68 0.603506
Target:  5'- cAC-CUGGCUcaaCGACGAGuuCGGCGgCCu -3'
miRNA:   3'- -UGaGACCGA---GCUGCUCcuGCUGCaGG- -5'
16406 3' -56.2 NC_004084.1 + 32391 0.68 0.603506
Target:  5'- aGCUCgGGCUCGA--AGGcuACGACaacaGUCCg -3'
miRNA:   3'- -UGAGaCCGAGCUgcUCC--UGCUG----CAGG- -5'
16406 3' -56.2 NC_004084.1 + 1846 0.69 0.52951
Target:  5'- -gUgUGGCUCcugcagcGCGAcGGACGACGUCg -3'
miRNA:   3'- ugAgACCGAGc------UGCU-CCUGCUGCAGg -5'
16406 3' -56.2 NC_004084.1 + 53246 0.69 0.523304
Target:  5'- aGCg--GGCggucgUCGACGGcgacgagaucgggccGGGCGACGUCCu -3'
miRNA:   3'- -UGagaCCG-----AGCUGCU---------------CCUGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 21393 0.69 0.519183
Target:  5'- aGCUCgGGCaUGAUccGGuCGACGUCCa -3'
miRNA:   3'- -UGAGaCCGaGCUGcuCCuGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 27486 0.69 0.519183
Target:  5'- aGCUCgacgUCGACGAGGcgauCGACGUCUu -3'
miRNA:   3'- -UGAGaccgAGCUGCUCCu---GCUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.