miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16406 3' -56.2 NC_004084.1 + 629 0.66 0.740395
Target:  5'- --gCUGGCgaucucgUCGugGAGcuccucGACGGCGUCg -3'
miRNA:   3'- ugaGACCG-------AGCugCUC------CUGCUGCAGg -5'
16406 3' -56.2 NC_004084.1 + 937 0.74 0.304539
Target:  5'- cCUCUGGCUCGAcaaguucgacucCGGGGACcGCaUCCu -3'
miRNA:   3'- uGAGACCGAGCU------------GCUCCUGcUGcAGG- -5'
16406 3' -56.2 NC_004084.1 + 1215 0.71 0.402917
Target:  5'- cGCUggCUGGCUCGGCggcgggaucGAGGGCGaucGCGcCCa -3'
miRNA:   3'- -UGA--GACCGAGCUG---------CUCCUGC---UGCaGG- -5'
16406 3' -56.2 NC_004084.1 + 1658 0.7 0.45329
Target:  5'- cGCUCgucaucaugGGCUCGuCGGGcGACcugaucgacgcgaagGACGUCCg -3'
miRNA:   3'- -UGAGa--------CCGAGCuGCUC-CUG---------------CUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 1770 0.67 0.657203
Target:  5'- aGCgg-GGCcUGGCGAGGugGuCGUUCu -3'
miRNA:   3'- -UGagaCCGaGCUGCUCCugCuGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 1846 0.69 0.52951
Target:  5'- -gUgUGGCUCcugcagcGCGAcGGACGACGUCg -3'
miRNA:   3'- ugAgACCGAGc------UGCU-CCUGCUGCAGg -5'
16406 3' -56.2 NC_004084.1 + 2303 0.67 0.64647
Target:  5'- cACUgcGGCgcacgacgUCGACGAGGACGAUGa-- -3'
miRNA:   3'- -UGAgaCCG--------AGCUGCUCCUGCUGCagg -5'
16406 3' -56.2 NC_004084.1 + 4211 0.66 0.720783
Target:  5'- gACUCgagccgcugacGGUcggaaUCGACGAGGA-GGCGUCg -3'
miRNA:   3'- -UGAGa----------CCG-----AGCUGCUCCUgCUGCAGg -5'
16406 3' -56.2 NC_004084.1 + 4928 0.69 0.519183
Target:  5'- gACUUc-GCcgUCGACGuacuGGAUGACGUCCg -3'
miRNA:   3'- -UGAGacCG--AGCUGCu---CCUGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 6236 0.7 0.446566
Target:  5'- aACUCgucuaGGUgaucgagcgguucgUCGACGuGGuCGGCGUCCa -3'
miRNA:   3'- -UGAGa----CCG--------------AGCUGCuCCuGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 7413 0.7 0.498777
Target:  5'- ----aGGCgaucgaCGACGAGGGCGAUG-CCg -3'
miRNA:   3'- ugagaCCGa-----GCUGCUCCUGCUGCaGG- -5'
16406 3' -56.2 NC_004084.1 + 7451 0.67 0.680723
Target:  5'- aACUCUcucaGGCUCGuuucguccucguCGAGGAggagaucagggucguCGACGUCg -3'
miRNA:   3'- -UGAGA----CCGAGCu-----------GCUCCU---------------GCUGCAGg -5'
16406 3' -56.2 NC_004084.1 + 10331 0.67 0.624976
Target:  5'- cCUCUGGUUCGACagcaugucgGAGGAgaaGGuCGUUCg -3'
miRNA:   3'- uGAGACCGAGCUG---------CUCCUg--CU-GCAGG- -5'
16406 3' -56.2 NC_004084.1 + 11666 0.67 0.64647
Target:  5'- -gUC-GGCgacgacuaCGGCGAGGacaGCGACGUCUa -3'
miRNA:   3'- ugAGaCCGa-------GCUGCUCC---UGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 12925 0.7 0.459098
Target:  5'- --aCUGGg-CGACGAuGACGACGUCUu -3'
miRNA:   3'- ugaGACCgaGCUGCUcCUGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 12960 0.7 0.459098
Target:  5'- gGCUC-GGCuUCGAucCGcGGGCGGCGUCa -3'
miRNA:   3'- -UGAGaCCG-AGCU--GCuCCUGCUGCAGg -5'
16406 3' -56.2 NC_004084.1 + 15016 0.66 0.699813
Target:  5'- cGCUgcGGCUCGuCGAGcGuCGACGgCCa -3'
miRNA:   3'- -UGAgaCCGAGCuGCUC-CuGCUGCaGG- -5'
16406 3' -56.2 NC_004084.1 + 16936 0.66 0.741417
Target:  5'- gUUC-GGCaUCGGCGGGcGucGCGACGUCg -3'
miRNA:   3'- uGAGaCCG-AGCUGCUC-C--UGCUGCAGg -5'
16406 3' -56.2 NC_004084.1 + 17441 0.67 0.63465
Target:  5'- aACUCgucgGGUucguccgggaucgUCGACG-GGaucaacucguucGCGACGUCCg -3'
miRNA:   3'- -UGAGa---CCG-------------AGCUGCuCC------------UGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 17753 0.66 0.741417
Target:  5'- uGCUCUGGauccgCGGCGAGaGCauguacugGACGUCg -3'
miRNA:   3'- -UGAGACCga---GCUGCUCcUG--------CUGCAGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.