miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16406 3' -56.2 NC_004084.1 + 18128 0.67 0.64647
Target:  5'- -gUCcGGCUCGGCccGGAUGGaGUCCg -3'
miRNA:   3'- ugAGaCCGAGCUGcuCCUGCUgCAGG- -5'
16406 3' -56.2 NC_004084.1 + 18553 0.71 0.439897
Target:  5'- aACUCgggugGGC-CGACGGGGagaucGCGACGgUCUg -3'
miRNA:   3'- -UGAGa----CCGaGCUGCUCC-----UGCUGC-AGG- -5'
16406 3' -56.2 NC_004084.1 + 19559 1.1 0.000857
Target:  5'- aACUCUGGCUCGACGAGGACGACGUCCc -3'
miRNA:   3'- -UGAGACCGAGCUGCUCCUGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 19635 0.82 0.080813
Target:  5'- gUUCcGGCUCGACGAcGAUGGCGUCCa -3'
miRNA:   3'- uGAGaCCGAGCUGCUcCUGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 20891 0.66 0.731147
Target:  5'- aGCgUCUacaaCUaCGACGAGGAcaucauCGACGUCCg -3'
miRNA:   3'- -UG-AGAcc--GA-GCUGCUCCU------GCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 21393 0.69 0.519183
Target:  5'- aGCUCgGGCaUGAUccGGuCGACGUCCa -3'
miRNA:   3'- -UGAGaCCGaGCUGcuCCuGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 21470 0.7 0.488708
Target:  5'- ----cGGCUCGcccuCGAGGGCGGCGaucgCCu -3'
miRNA:   3'- ugagaCCGAGCu---GCUCCUGCUGCa---GG- -5'
16406 3' -56.2 NC_004084.1 + 23070 0.77 0.173839
Target:  5'- -gUCgccGGCgacgCGACGAGGugGACGUCg -3'
miRNA:   3'- ugAGa--CCGa---GCUGCUCCugCUGCAGg -5'
16406 3' -56.2 NC_004084.1 + 27486 0.69 0.519183
Target:  5'- aGCUCgacgUCGACGAGGcgauCGACGUCUu -3'
miRNA:   3'- -UGAGaccgAGCUGCUCCu---GCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 27626 0.67 0.621752
Target:  5'- -aUCUGGUUCGACGcagaagugaucgagGGGAUGcCG-CCg -3'
miRNA:   3'- ugAGACCGAGCUGC--------------UCCUGCuGCaGG- -5'
16406 3' -56.2 NC_004084.1 + 29219 0.72 0.385181
Target:  5'- cGCUCUGGaacaUCGACGccgagcAGGGCGAguUCCg -3'
miRNA:   3'- -UGAGACCg---AGCUGC------UCCUGCUgcAGG- -5'
16406 3' -56.2 NC_004084.1 + 29314 0.66 0.689229
Target:  5'- cGCUacCUGGa-UGGCGcGGAgGACGUCCc -3'
miRNA:   3'- -UGA--GACCgaGCUGCuCCUgCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 30418 0.75 0.252379
Target:  5'- -gUCgacgGGCggcgacggaagcgaUGGCGAGGACGACGUCCc -3'
miRNA:   3'- ugAGa---CCGa-------------GCUGCUCCUGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 32391 0.68 0.603506
Target:  5'- aGCUCgGGCUCGA--AGGcuACGACaacaGUCCg -3'
miRNA:   3'- -UGAGaCCGAGCUgcUCC--UGCUG----CAGG- -5'
16406 3' -56.2 NC_004084.1 + 34843 0.67 0.64647
Target:  5'- -aUCUGGCUCucgacgacaGCGGGGagcGCGAuauCGUCCg -3'
miRNA:   3'- ugAGACCGAGc--------UGCUCC---UGCU---GCAGG- -5'
16406 3' -56.2 NC_004084.1 + 35039 0.66 0.731147
Target:  5'- cCUCgagUGGCUCG-CGAcGGAuccgaacguCGACGUCg -3'
miRNA:   3'- uGAG---ACCGAGCuGCU-CCU---------GCUGCAGg -5'
16406 3' -56.2 NC_004084.1 + 35323 0.7 0.449441
Target:  5'- --gCUGGCUaucCGAGGucgcCGACGUCCa -3'
miRNA:   3'- ugaGACCGAgcuGCUCCu---GCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 36158 0.66 0.699813
Target:  5'- --aCUGGaUCGACGu---CGACGUCCg -3'
miRNA:   3'- ugaGACCgAGCUGCuccuGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 38835 0.66 0.689229
Target:  5'- aACUCgucgucCUCGugGucuGGGACGuCGUCCu -3'
miRNA:   3'- -UGAGacc---GAGCugC---UCCUGCuGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 39237 0.67 0.678592
Target:  5'- -aUC-GGCgUCGAUGGGGAUcaGCGUCCc -3'
miRNA:   3'- ugAGaCCG-AGCUGCUCCUGc-UGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.