miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16406 3' -56.2 NC_004084.1 + 58081 0.68 0.603506
Target:  5'- cAC-CUGGCUcaaCGACGAGuuCGGCGgCCu -3'
miRNA:   3'- -UGaGACCGA---GCUGCUCcuGCUGCaGG- -5'
16406 3' -56.2 NC_004084.1 + 57753 0.66 0.710334
Target:  5'- uGCUCgUGGCguucACGGaggagcuugcGGGCGAUGUCCu -3'
miRNA:   3'- -UGAG-ACCGagc-UGCU----------CCUGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 57310 0.66 0.699813
Target:  5'- cCUC---CUCGACGAGGGgGACG-CCu -3'
miRNA:   3'- uGAGaccGAGCUGCUCCUgCUGCaGG- -5'
16406 3' -56.2 NC_004084.1 + 56914 0.74 0.269347
Target:  5'- -aUC-GGCuUCGAgcuCGAGGGCGACGUCUa -3'
miRNA:   3'- ugAGaCCG-AGCU---GCUCCUGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 56286 0.67 0.657203
Target:  5'- -gUCUGGUgaccUCGGuggaaGAGGAUG-CGUCCg -3'
miRNA:   3'- ugAGACCG----AGCUg----CUCCUGCuGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 55760 0.66 0.720783
Target:  5'- gGCUCgaacGaGCUCGACu-GGACGAUgaacacgaucgaGUCCg -3'
miRNA:   3'- -UGAGa---C-CGAGCUGcuCCUGCUG------------CAGG- -5'
16406 3' -56.2 NC_004084.1 + 53246 0.69 0.523304
Target:  5'- aGCg--GGCggucgUCGACGGcgacgagaucgggccGGGCGACGUCCu -3'
miRNA:   3'- -UGagaCCG-----AGCUGCU---------------CCUGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 51843 0.66 0.731147
Target:  5'- cACUCucgaagagcgcgUGGCUCGACGAgucgaacuaccGGACGcCGgUCg -3'
miRNA:   3'- -UGAG------------ACCGAGCUGCU-----------CCUGCuGC-AGg -5'
16406 3' -56.2 NC_004084.1 + 50952 0.66 0.731147
Target:  5'- uCUCcucCUCGACGAGGACGAaaCGagCCu -3'
miRNA:   3'- uGAGaccGAGCUGCUCCUGCU--GCa-GG- -5'
16406 3' -56.2 NC_004084.1 + 50246 0.67 0.636799
Target:  5'- cCUCUGcGUccucgucgccguuggCGGCGAGGuccuCGACGUCUg -3'
miRNA:   3'- uGAGAC-CGa--------------GCUGCUCCu---GCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 49376 0.67 0.624976
Target:  5'- gACUCUacccGCUCGAUGcGGGAuucguagucguCGugGUCCu -3'
miRNA:   3'- -UGAGAc---CGAGCUGC-UCCU-----------GCugCAGG- -5'
16406 3' -56.2 NC_004084.1 + 48494 0.66 0.710334
Target:  5'- cGCUgaGGCUCGuCGAGG-CGcucuUGUCUu -3'
miRNA:   3'- -UGAgaCCGAGCuGCUCCuGCu---GCAGG- -5'
16406 3' -56.2 NC_004084.1 + 47483 0.66 0.731147
Target:  5'- --aCUGGCuguucgagguguUCGGCGAaGACGACGaacUCCc -3'
miRNA:   3'- ugaGACCG------------AGCUGCUcCUGCUGC---AGG- -5'
16406 3' -56.2 NC_004084.1 + 47260 0.72 0.359563
Target:  5'- ----cGGCUCGccggcgccuacuACGAGGucgACGACGUCCa -3'
miRNA:   3'- ugagaCCGAGC------------UGCUCC---UGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 44928 0.69 0.5161
Target:  5'- aGCUgaGGUgacgaugacguucgUCGACGAGaACGGCGUUCg -3'
miRNA:   3'- -UGAgaCCG--------------AGCUGCUCcUGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 40813 0.66 0.720783
Target:  5'- cGCgaagCUGGCgaUCGACGuccacguuccggAGGuCGAgGUCCc -3'
miRNA:   3'- -UGa---GACCG--AGCUGC------------UCCuGCUgCAGG- -5'
16406 3' -56.2 NC_004084.1 + 39719 0.68 0.614234
Target:  5'- ----cGGCgacgacgccgUCGACGAGGAUGACGaggaggacUCCg -3'
miRNA:   3'- ugagaCCG----------AGCUGCUCCUGCUGC--------AGG- -5'
16406 3' -56.2 NC_004084.1 + 39605 0.67 0.678592
Target:  5'- cCUcCUGGa-CGugGccGGCGACGUCCu -3'
miRNA:   3'- uGA-GACCgaGCugCucCUGCUGCAGG- -5'
16406 3' -56.2 NC_004084.1 + 39357 0.66 0.710334
Target:  5'- aAC-CUGcccGUUCG-UGAGGACGACG-CCg -3'
miRNA:   3'- -UGaGAC---CGAGCuGCUCCUGCUGCaGG- -5'
16406 3' -56.2 NC_004084.1 + 39237 0.67 0.678592
Target:  5'- -aUC-GGCgUCGAUGGGGAUcaGCGUCCc -3'
miRNA:   3'- ugAGaCCG-AGCUGCUCCUGc-UGCAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.