Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16406 | 3' | -56.2 | NC_004084.1 | + | 16936 | 0.66 | 0.741417 |
Target: 5'- gUUC-GGCaUCGGCGGGcGucGCGACGUCg -3' miRNA: 3'- uGAGaCCG-AGCUGCUC-C--UGCUGCAGg -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 32391 | 0.68 | 0.603506 |
Target: 5'- aGCUCgGGCUCGA--AGGcuACGACaacaGUCCg -3' miRNA: 3'- -UGAGaCCGAGCUgcUCC--UGCUG----CAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 4928 | 0.69 | 0.519183 |
Target: 5'- gACUUc-GCcgUCGACGuacuGGAUGACGUCCg -3' miRNA: 3'- -UGAGacCG--AGCUGCu---CCUGCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 23070 | 0.77 | 0.173839 |
Target: 5'- -gUCgccGGCgacgCGACGAGGugGACGUCg -3' miRNA: 3'- ugAGa--CCGa---GCUGCUCCugCUGCAGg -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 48494 | 0.66 | 0.710334 |
Target: 5'- cGCUgaGGCUCGuCGAGG-CGcucuUGUCUu -3' miRNA: 3'- -UGAgaCCGAGCuGCUCCuGCu---GCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 57753 | 0.66 | 0.710334 |
Target: 5'- uGCUCgUGGCguucACGGaggagcuugcGGGCGAUGUCCu -3' miRNA: 3'- -UGAG-ACCGagc-UGCU----------CCUGCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 15016 | 0.66 | 0.699813 |
Target: 5'- cGCUgcGGCUCGuCGAGcGuCGACGgCCa -3' miRNA: 3'- -UGAgaCCGAGCuGCUC-CuGCUGCaGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 38835 | 0.66 | 0.689229 |
Target: 5'- aACUCgucgucCUCGugGucuGGGACGuCGUCCu -3' miRNA: 3'- -UGAGacc---GAGCugC---UCCUGCuGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 56286 | 0.67 | 0.657203 |
Target: 5'- -gUCUGGUgaccUCGGuggaaGAGGAUG-CGUCCg -3' miRNA: 3'- ugAGACCG----AGCUg----CUCCUGCuGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 49376 | 0.67 | 0.624976 |
Target: 5'- gACUCUacccGCUCGAUGcGGGAuucguagucguCGugGUCCu -3' miRNA: 3'- -UGAGAc---CGAGCUGC-UCCU-----------GCugCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 18128 | 0.67 | 0.64647 |
Target: 5'- -gUCcGGCUCGGCccGGAUGGaGUCCg -3' miRNA: 3'- ugAGaCCGAGCUGcuCCUGCUgCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 39237 | 0.67 | 0.678592 |
Target: 5'- -aUC-GGCgUCGAUGGGGAUcaGCGUCCc -3' miRNA: 3'- ugAGaCCG-AGCUGCUCCUGc-UGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 17753 | 0.66 | 0.741417 |
Target: 5'- uGCUCUGGauccgCGGCGAGaGCauguacugGACGUCg -3' miRNA: 3'- -UGAGACCga---GCUGCUCcUG--------CUGCAGg -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 50246 | 0.67 | 0.636799 |
Target: 5'- cCUCUGcGUccucgucgccguuggCGGCGAGGuccuCGACGUCUg -3' miRNA: 3'- uGAGAC-CGa--------------GCUGCUCCu---GCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 629 | 0.66 | 0.740395 |
Target: 5'- --gCUGGCgaucucgUCGugGAGcuccucGACGGCGUCg -3' miRNA: 3'- ugaGACCG-------AGCugCUC------CUGCUGCAGg -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 7451 | 0.67 | 0.680723 |
Target: 5'- aACUCUcucaGGCUCGuuucguccucguCGAGGAggagaucagggucguCGACGUCg -3' miRNA: 3'- -UGAGA----CCGAGCu-----------GCUCCU---------------GCUGCAGg -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 17441 | 0.67 | 0.63465 |
Target: 5'- aACUCgucgGGUucguccgggaucgUCGACG-GGaucaacucguucGCGACGUCCg -3' miRNA: 3'- -UGAGa---CCG-------------AGCUGCuCC------------UGCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 21393 | 0.69 | 0.519183 |
Target: 5'- aGCUCgGGCaUGAUccGGuCGACGUCCa -3' miRNA: 3'- -UGAGaCCGaGCUGcuCCuGCUGCAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 55760 | 0.66 | 0.720783 |
Target: 5'- gGCUCgaacGaGCUCGACu-GGACGAUgaacacgaucgaGUCCg -3' miRNA: 3'- -UGAGa---C-CGAGCUGcuCCUGCUG------------CAGG- -5' |
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16406 | 3' | -56.2 | NC_004084.1 | + | 36158 | 0.66 | 0.699813 |
Target: 5'- --aCUGGaUCGACGu---CGACGUCCg -3' miRNA: 3'- ugaGACCgAGCUGCuccuGCUGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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