Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16406 | 5' | -52.9 | NC_004084.1 | + | 19593 | 1.09 | 0.001986 |
Target: 5'- cGAGGACGACGAGUUCGUGGUCAAGCAc -3' miRNA: 3'- -CUCCUGCUGCUCAAGCACCAGUUCGU- -5' |
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16406 | 5' | -52.9 | NC_004084.1 | + | 14403 | 0.71 | 0.581397 |
Target: 5'- cGGGGCGAUGuucucgaAGUUCGUcGGUCAgcucgGGCAg -3' miRNA: 3'- cUCCUGCUGC-------UCAAGCA-CCAGU-----UCGU- -5' |
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16406 | 5' | -52.9 | NC_004084.1 | + | 49878 | 0.71 | 0.571483 |
Target: 5'- uGAGGACGuCGAucUCGaGGUCGGGUAc -3' miRNA: 3'- -CUCCUGCuGCUcaAGCaCCAGUUCGU- -5' |
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16406 | 5' | -52.9 | NC_004084.1 | + | 50143 | 0.7 | 0.626904 |
Target: 5'- -cGGAUGACGAGgUCGUuGUCGAGgAu -3' miRNA: 3'- cuCCUGCUGCUCaAGCAcCAGUUCgU- -5' |
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16406 | 5' | -52.9 | NC_004084.1 | + | 2860 | 0.69 | 0.704372 |
Target: 5'- cAGGcCGACGAGUUCGUcgcGGcCAgccAGCGc -3' miRNA: 3'- cUCCuGCUGCUCAAGCA---CCaGU---UCGU- -5' |
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16406 | 5' | -52.9 | NC_004084.1 | + | 30852 | 0.68 | 0.726026 |
Target: 5'- aGAGGugGGCGGcccgcucgucacGUUCGaUGG-CGAGCu -3' miRNA: 3'- -CUCCugCUGCU------------CAAGC-ACCaGUUCGu -5' |
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16406 | 5' | -52.9 | NC_004084.1 | + | 16345 | 0.68 | 0.747297 |
Target: 5'- cGAccGCGACGAGUUgcuucgCGUGGUgGAGCu -3' miRNA: 3'- -CUccUGCUGCUCAA------GCACCAgUUCGu -5' |
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16406 | 5' | -52.9 | NC_004084.1 | + | 53259 | 0.68 | 0.768089 |
Target: 5'- cGAcGGCGACGAGaUCG-GGcCGGGCGa -3' miRNA: 3'- -CUcCUGCUGCUCaAGCaCCaGUUCGU- -5' |
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16406 | 5' | -52.9 | NC_004084.1 | + | 1037 | 0.68 | 0.757759 |
Target: 5'- cGGGGGCGcgcuCGAGUUCGccgaGGUCGaacAGCc -3' miRNA: 3'- -CUCCUGCu---GCUCAAGCa---CCAGU---UCGu -5' |
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16406 | 5' | -52.9 | NC_004084.1 | + | 49884 | 0.67 | 0.807862 |
Target: 5'- cGGGACGAUGGGUcUUGUGGcUCAAc-- -3' miRNA: 3'- cUCCUGCUGCUCA-AGCACC-AGUUcgu -5' |
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16406 | 5' | -52.9 | NC_004084.1 | + | 24012 | 0.67 | 0.798174 |
Target: 5'- aAGGagauccGCGGCGuAGUUgCGUGGgagCAAGCGg -3' miRNA: 3'- cUCC------UGCUGC-UCAA-GCACCa--GUUCGU- -5' |
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16406 | 5' | -52.9 | NC_004084.1 | + | 32102 | 0.67 | 0.817361 |
Target: 5'- -uGGACGAgcuCGAGcagcUCGUcGUCGAGCAc -3' miRNA: 3'- cuCCUGCU---GCUCa---AGCAcCAGUUCGU- -5' |
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16406 | 5' | -52.9 | NC_004084.1 | + | 58075 | 0.67 | 0.807862 |
Target: 5'- aGAGGccaccuggcucaACGACGAGUUCGgcGGccUCAuGCAg -3' miRNA: 3'- -CUCC------------UGCUGCUCAAGCa-CC--AGUuCGU- -5' |
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16406 | 5' | -52.9 | NC_004084.1 | + | 39255 | 0.66 | 0.853265 |
Target: 5'- aAGGGCGGCGGGaagaUgGUGGUCGucgaucGCGu -3' miRNA: 3'- cUCCUGCUGCUCa---AgCACCAGUu-----CGU- -5' |
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16406 | 5' | -52.9 | NC_004084.1 | + | 52580 | 0.66 | 0.826661 |
Target: 5'- cGAGGACuGCGGcggCGUGGUCcGGUg -3' miRNA: 3'- -CUCCUGcUGCUcaaGCACCAGuUCGu -5' |
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16406 | 5' | -52.9 | NC_004084.1 | + | 33256 | 0.66 | 0.826661 |
Target: 5'- uGAGGACGuCGAGgaCGUcGUCA-GCu -3' miRNA: 3'- -CUCCUGCuGCUCaaGCAcCAGUuCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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