miRNA display CGI


Results 21 - 40 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16407 3' -52.8 NC_004084.1 + 18541 0.66 0.863264
Target:  5'- gUCGAUaccgcacugcaGCUcagCG-UGCuCGACGGCGCCg -3'
miRNA:   3'- -AGCUA-----------CGAca-GCuAUG-GCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 28406 0.66 0.863264
Target:  5'- gUCGAUGCgaacgcugacGUCGucaccagcgACCaGGuCGACGCCg -3'
miRNA:   3'- -AGCUACGa---------CAGCua-------UGG-CU-GCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 45733 0.66 0.86245
Target:  5'- gCGGUGCUgGUCGGcUACgaaccaguccgcuCGAUcggGACGCCg -3'
miRNA:   3'- aGCUACGA-CAGCU-AUG-------------GCUG---CUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 40255 0.67 0.858349
Target:  5'- aCG-UGC--UCGAUcuccaucguccacucGCCGGCGACGUCg -3'
miRNA:   3'- aGCuACGacAGCUA---------------UGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 57511 0.67 0.855025
Target:  5'- ----cGCaG-CGAacuCCGACGACGCCg -3'
miRNA:   3'- agcuaCGaCaGCUau-GGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 46756 0.67 0.855025
Target:  5'- cUCGccGUaGUCGucGCCGAcCGACGUCg -3'
miRNA:   3'- -AGCuaCGaCAGCuaUGGCU-GCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 48697 0.67 0.855025
Target:  5'- aCGggGCc-UCGAauCCGGCGACGUCc -3'
miRNA:   3'- aGCuaCGacAGCUauGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 42687 0.67 0.855025
Target:  5'- gCGAgGCUGccagcgaucacCGAUGCUGACGAC-CCu -3'
miRNA:   3'- aGCUaCGACa----------GCUAUGGCUGCUGcGG- -5'
16407 3' -52.8 NC_004084.1 + 31716 0.67 0.855025
Target:  5'- -aGcgGCUaugacuacGcCGAUAUCGACGAUGUCg -3'
miRNA:   3'- agCuaCGA--------CaGCUAUGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 30334 0.67 0.846555
Target:  5'- cCGuUGaCcGUCGGcgaggugGCCGACGGCGUCg -3'
miRNA:   3'- aGCuAC-GaCAGCUa------UGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 49343 0.67 0.846555
Target:  5'- gCGAUcgUGUCGAggugAUCGuCGACGUCg -3'
miRNA:   3'- aGCUAcgACAGCUa---UGGCuGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 58002 0.67 0.846555
Target:  5'- aCGAgUGCgacGUCcagAUCGACGACGUCu -3'
miRNA:   3'- aGCU-ACGa--CAGcuaUGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 18999 0.67 0.846555
Target:  5'- aCGAaGCa-UCGAgugaggaCGACGACGCCg -3'
miRNA:   3'- aGCUaCGacAGCUaug----GCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 47031 0.67 0.837861
Target:  5'- aUCGAUGa---CGAUGCCGGgGAgUGCCc -3'
miRNA:   3'- -AGCUACgacaGCUAUGGCUgCU-GCGG- -5'
16407 3' -52.8 NC_004084.1 + 15784 0.67 0.837861
Target:  5'- cUCGAUGCacUUGAggACCGuucgGACGCCu -3'
miRNA:   3'- -AGCUACGacAGCUa-UGGCug--CUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 48991 0.67 0.832541
Target:  5'- gUCGcgGCccaucgcgcgguccgUGUCGAUcgugACCGAcaCGACGUCc -3'
miRNA:   3'- -AGCuaCG---------------ACAGCUA----UGGCU--GCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 48088 0.67 0.828952
Target:  5'- cCGAcaUGCUGUCGA-ACCa--GAgGCCa -3'
miRNA:   3'- aGCU--ACGACAGCUaUGGcugCUgCGG- -5'
16407 3' -52.8 NC_004084.1 + 56983 0.67 0.828952
Target:  5'- gCGAaggagGCgGcCGAggaCGGCGACGCCg -3'
miRNA:   3'- aGCUa----CGaCaGCUaugGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 9972 0.67 0.819837
Target:  5'- aUCGAcauCUGUucacCGuacugGCCGACGACGUCg -3'
miRNA:   3'- -AGCUac-GACA----GCua---UGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 54088 0.67 0.819837
Target:  5'- gUCGGUGgaGaacgcucCGGacUCGACGACGCCc -3'
miRNA:   3'- -AGCUACgaCa------GCUauGGCUGCUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.