miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16407 5' -51.4 NC_004084.1 + 38312 0.73 0.610045
Target:  5'- cGACGAgcgugaCGUCGAUAUCGACGgUCGu- -3'
miRNA:   3'- uCUGCUg-----GCAGCUAUAGCUGC-AGUgc -5'
16407 5' -51.4 NC_004084.1 + 11922 0.73 0.610045
Target:  5'- cGGCGACCGg------CGACGUCGCGa -3'
miRNA:   3'- uCUGCUGGCagcuauaGCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 54582 0.72 0.643108
Target:  5'- cGGugGAgCCGUCG---UCGGCGUCgACGa -3'
miRNA:   3'- -UCugCU-GGCAGCuauAGCUGCAG-UGC- -5'
16407 5' -51.4 NC_004084.1 + 52939 0.72 0.643108
Target:  5'- cGACGaucugGCCGUCGGcGUCGucgugauCGUCGCGa -3'
miRNA:   3'- uCUGC-----UGGCAGCUaUAGCu------GCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 52473 0.72 0.643108
Target:  5'- cGAUGGCCGaggCGAagcgCGACGUCAUGu -3'
miRNA:   3'- uCUGCUGGCa--GCUaua-GCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 26399 0.72 0.665117
Target:  5'- cGACGGCa-UCGAUAUCGGCGUaauuCGa -3'
miRNA:   3'- uCUGCUGgcAGCUAUAGCUGCAgu--GC- -5'
16407 5' -51.4 NC_004084.1 + 41778 0.72 0.665117
Target:  5'- cGGACGA-CGUCGAcgacGagGGCGUCACGa -3'
miRNA:   3'- -UCUGCUgGCAGCUa---UagCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 19078 0.72 0.676079
Target:  5'- -cGCGGCCGUCuacGUCGACGUCGa- -3'
miRNA:   3'- ucUGCUGGCAGcuaUAGCUGCAGUgc -5'
16407 5' -51.4 NC_004084.1 + 41627 0.72 0.665117
Target:  5'- gAGGCGACgGUCcggGAcAUCGACGUCGa- -3'
miRNA:   3'- -UCUGCUGgCAG---CUaUAGCUGCAGUgc -5'
16407 5' -51.4 NC_004084.1 + 37047 0.71 0.719402
Target:  5'- -cACGGUCGUCGAUGUCGAUGUUcuCGg -3'
miRNA:   3'- ucUGCUGGCAGCUAUAGCUGCAGu-GC- -5'
16407 5' -51.4 NC_004084.1 + 31392 0.71 0.730045
Target:  5'- gGGGCGGacuaCGcCGAUAUCGGCGaagUCGCa -3'
miRNA:   3'- -UCUGCUg---GCaGCUAUAGCUGC---AGUGc -5'
16407 5' -51.4 NC_004084.1 + 16428 0.71 0.719402
Target:  5'- aAGACGG-CGUCGAUGUgGGCaucgGUUACGg -3'
miRNA:   3'- -UCUGCUgGCAGCUAUAgCUG----CAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 52095 0.71 0.730045
Target:  5'- cGACGuuaccGCCGg-GAUGUCGACGUCGg- -3'
miRNA:   3'- uCUGC-----UGGCagCUAUAGCUGCAGUgc -5'
16407 5' -51.4 NC_004084.1 + 35227 0.71 0.730045
Target:  5'- cGACGAUCG-CGA--UCGACGUCGa- -3'
miRNA:   3'- uCUGCUGGCaGCUauAGCUGCAGUgc -5'
16407 5' -51.4 NC_004084.1 + 49246 0.7 0.751023
Target:  5'- cGAUGACUGaaGAgAUCGACGUcCACGu -3'
miRNA:   3'- uCUGCUGGCagCUaUAGCUGCA-GUGC- -5'
16407 5' -51.4 NC_004084.1 + 21859 0.7 0.768476
Target:  5'- cGACGACgaguucaucuccguCGUCGAUAcCGuuGUCGCGa -3'
miRNA:   3'- uCUGCUG--------------GCAGCUAUaGCugCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 17510 0.7 0.749985
Target:  5'- uGACGGCaucccguCGUCgGAUAUCGauguugaagGCGUCACGa -3'
miRNA:   3'- uCUGCUG-------GCAG-CUAUAGC---------UGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 16486 0.7 0.775548
Target:  5'- gAGACGACCaUCGGgaUAUCGccacagcaggcgaucGCGUCGCc -3'
miRNA:   3'- -UCUGCUGGcAGCU--AUAGC---------------UGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 27475 0.7 0.781552
Target:  5'- cGGCGuCC-UCGAgcUCGACGUCgACGa -3'
miRNA:   3'- uCUGCuGGcAGCUauAGCUGCAG-UGC- -5'
16407 5' -51.4 NC_004084.1 + 8540 0.69 0.83812
Target:  5'- -cGCGACC-UCGAgAUCGACGUC-Cu -3'
miRNA:   3'- ucUGCUGGcAGCUaUAGCUGCAGuGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.