miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16407 5' -51.4 NC_004084.1 + 775 0.69 0.810681
Target:  5'- cGAuCGGCuCGUCGAgg-CGACG-CGCGa -3'
miRNA:   3'- uCU-GCUG-GCAGCUauaGCUGCaGUGC- -5'
16407 5' -51.4 NC_004084.1 + 9423 0.69 0.810681
Target:  5'- cGACacgGACCGcgCGAUGggccgCGACGUCgACGa -3'
miRNA:   3'- uCUG---CUGGCa-GCUAUa----GCUGCAG-UGC- -5'
16407 5' -51.4 NC_004084.1 + 17043 0.69 0.810681
Target:  5'- -uGCGcCCGUCGAUGcggugacUGACGUCGCa -3'
miRNA:   3'- ucUGCuGGCAGCUAUa------GCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 43564 0.69 0.810681
Target:  5'- cGGCGGCCGUC-AUccCGACGaggCGCGg -3'
miRNA:   3'- uCUGCUGGCAGcUAuaGCUGCa--GUGC- -5'
16407 5' -51.4 NC_004084.1 + 50175 0.69 0.820029
Target:  5'- -aGCGGC-GUCGAUcgucUCGACGUCGCc -3'
miRNA:   3'- ucUGCUGgCAGCUAu---AGCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 36689 0.69 0.820029
Target:  5'- aGGAgGACUG-CGA---UGACGUCGCGg -3'
miRNA:   3'- -UCUgCUGGCaGCUauaGCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 39256 0.69 0.83546
Target:  5'- aGGGCGGCgggaagauggugguCGUCGA--UCG-CGUCGCGg -3'
miRNA:   3'- -UCUGCUG--------------GCAGCUauAGCuGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 8540 0.69 0.83812
Target:  5'- -cGCGACC-UCGAgAUCGACGUC-Cu -3'
miRNA:   3'- ucUGCUGGcAGCUaUAGCUGCAGuGc -5'
16407 5' -51.4 NC_004084.1 + 35903 0.69 0.83812
Target:  5'- gAGGCGAUCGUCGucgaggaUGACGcguUCACGa -3'
miRNA:   3'- -UCUGCUGGCAGCuaua---GCUGC---AGUGC- -5'
16407 5' -51.4 NC_004084.1 + 49829 0.68 0.846845
Target:  5'- cGACGAguUCaUCGAaucacucGUCGACGUCGCGa -3'
miRNA:   3'- uCUGCU--GGcAGCUa------UAGCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 54181 0.68 0.846845
Target:  5'- gAGGCGACCacGUCGGguggggaacgAUCuGugGUCACu -3'
miRNA:   3'- -UCUGCUGG--CAGCUa---------UAG-CugCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 22944 0.68 0.846845
Target:  5'- cGGCGAUCGccccUCGAccugcuccugGUCGAUGUCACu -3'
miRNA:   3'- uCUGCUGGC----AGCUa---------UAGCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 29766 0.68 0.846845
Target:  5'- cGAUGACCGUccugcaucgCGAcggGUCGGCGUaCACc -3'
miRNA:   3'- uCUGCUGGCA---------GCUa--UAGCUGCA-GUGc -5'
16407 5' -51.4 NC_004084.1 + 21988 0.68 0.846845
Target:  5'- cAGACGGCguaCGUCGA---CGACG-CGCGg -3'
miRNA:   3'- -UCUGCUG---GCAGCUauaGCUGCaGUGC- -5'
16407 5' -51.4 NC_004084.1 + 1554 0.68 0.855343
Target:  5'- cGACGGCCGUCGAgccggagcccgCGAacggguccaggacgaCGUCGCc -3'
miRNA:   3'- uCUGCUGGCAGCUaua--------GCU---------------GCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 21487 0.68 0.863607
Target:  5'- cGGCGAUCGccUCGGUugcGUCGuagGCGUCACc -3'
miRNA:   3'- uCUGCUGGC--AGCUA---UAGC---UGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 3814 0.68 0.863607
Target:  5'- cGGCGACC-UCGAUccagucuucGUCGACGcCgACGa -3'
miRNA:   3'- uCUGCUGGcAGCUA---------UAGCUGCaG-UGC- -5'
16407 5' -51.4 NC_004084.1 + 22797 0.68 0.871629
Target:  5'- aGGaACGAagCGUCGAgag-GGCGUCACGg -3'
miRNA:   3'- -UC-UGCUg-GCAGCUauagCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 49534 0.68 0.871629
Target:  5'- cGGACGAUCGagGugAUCGGCGUguCGa -3'
miRNA:   3'- -UCUGCUGGCagCuaUAGCUGCAguGC- -5'
16407 5' -51.4 NC_004084.1 + 16914 0.68 0.877096
Target:  5'- cAGGCGAUCGuggccgggugcgguUCGGcAUCGgcggGCGUCGCGa -3'
miRNA:   3'- -UCUGCUGGC--------------AGCUaUAGC----UGCAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.