Results 81 - 95 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16407 | 5' | -51.4 | NC_004084.1 | + | 18425 | 0.66 | 0.926397 |
Target: 5'- uGGACGGgC-UCGAUcUCGAuauaucCGUCACGa -3' miRNA: 3'- -UCUGCUgGcAGCUAuAGCU------GCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 47742 | 0.66 | 0.928677 |
Target: 5'- cGAUGACCGccauccgguuggcgCGAUccaucAUCGACGcCGCGu -3' miRNA: 3'- uCUGCUGGCa-------------GCUA-----UAGCUGCaGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 51410 | 0.66 | 0.932014 |
Target: 5'- cGACG-CCGUCGAggccuUCGAgGgcgaCACGc -3' miRNA: 3'- uCUGCuGGCAGCUau---AGCUgCa---GUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 4968 | 0.66 | 0.932014 |
Target: 5'- cGACGACCcaCGAggagAUCGGCGggaccCACu -3' miRNA: 3'- uCUGCUGGcaGCUa---UAGCUGCa----GUGc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 7803 | 0.66 | 0.932014 |
Target: 5'- --cUGACCGUCGAcgaccUCGACG-CugGa -3' miRNA: 3'- ucuGCUGGCAGCUau---AGCUGCaGugC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 27568 | 0.66 | 0.936307 |
Target: 5'- uGACGAgCGggcCGcccaccucuuUCGACGUCGCGa -3' miRNA: 3'- uCUGCUgGCa--GCuau-------AGCUGCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 1970 | 0.66 | 0.937353 |
Target: 5'- gAGAgCGcGCCGUCGAgAUCGuCGUUccgACGg -3' miRNA: 3'- -UCU-GC-UGGCAGCUaUAGCuGCAG---UGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 11007 | 0.66 | 0.937353 |
Target: 5'- cGACGuCCuUCGGcuUCGuCGUCGCGc -3' miRNA: 3'- uCUGCuGGcAGCUauAGCuGCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 11065 | 0.66 | 0.938901 |
Target: 5'- gGGGCGGCCGccgacgaacaugugcUUGAgGUCGGCGacgagaucgccguUCGCGg -3' miRNA: 3'- -UCUGCUGGC---------------AGCUaUAGCUGC-------------AGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 43394 | 0.66 | 0.942417 |
Target: 5'- gAGugG-CCGUCGAcgcUCGACGagcCGCa -3' miRNA: 3'- -UCugCuGGCAGCUau-AGCUGCa--GUGc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 39059 | 0.66 | 0.942417 |
Target: 5'- gGGACG-UUGUCGAUcagcagGUCGcUGUCGCGc -3' miRNA: 3'- -UCUGCuGGCAGCUA------UAGCuGCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 32007 | 0.66 | 0.942417 |
Target: 5'- uGGAgGGCucgaauuaCGcCGAUAUCGAugcCGUCGCGu -3' miRNA: 3'- -UCUgCUG--------GCaGCUAUAGCU---GCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 45669 | 0.66 | 0.942417 |
Target: 5'- cGACGAgaCgGUCGGcGUCGACGagaucgugCGCGg -3' miRNA: 3'- uCUGCU--GgCAGCUaUAGCUGCa-------GUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 30217 | 0.66 | 0.942417 |
Target: 5'- gAGACcauGACCGgaggCGAUGUccgcggCGACGUCGa- -3' miRNA: 3'- -UCUG---CUGGCa---GCUAUA------GCUGCAGUgc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 54209 | 0.65 | 0.945799 |
Target: 5'- --cCGACCGUCagcggcucgagucgGAUcUCGACGUCggaGCGa -3' miRNA: 3'- ucuGCUGGCAG--------------CUAuAGCUGCAG---UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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