miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16407 5' -51.4 NC_004084.1 + 21859 0.7 0.768476
Target:  5'- cGACGACgaguucaucuccguCGUCGAUAcCGuuGUCGCGa -3'
miRNA:   3'- uCUGCUG--------------GCAGCUAUaGCugCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 21988 0.68 0.846845
Target:  5'- cAGACGGCguaCGUCGA---CGACG-CGCGg -3'
miRNA:   3'- -UCUGCUG---GCAGCUauaGCUGCaGUGC- -5'
16407 5' -51.4 NC_004084.1 + 22797 0.68 0.871629
Target:  5'- aGGaACGAagCGUCGAgag-GGCGUCACGg -3'
miRNA:   3'- -UC-UGCUg-GCAGCUauagCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 22944 0.68 0.846845
Target:  5'- cGGCGAUCGccccUCGAccugcuccugGUCGAUGUCACu -3'
miRNA:   3'- uCUGCUGGC----AGCUa---------UAGCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 23075 0.67 0.901164
Target:  5'- cGGCGACgCGaCGAgGUgGACGUCgGCGa -3'
miRNA:   3'- uCUGCUG-GCaGCUaUAgCUGCAG-UGC- -5'
16407 5' -51.4 NC_004084.1 + 23362 0.67 0.907884
Target:  5'- uGGCGACCGccugcCGGUAUCaGGCGaUCAuCGa -3'
miRNA:   3'- uCUGCUGGCa----GCUAUAG-CUGC-AGU-GC- -5'
16407 5' -51.4 NC_004084.1 + 26399 0.72 0.665117
Target:  5'- cGACGGCa-UCGAUAUCGGCGUaauuCGa -3'
miRNA:   3'- uCUGCUGgcAGCUAUAGCUGCAgu--GC- -5'
16407 5' -51.4 NC_004084.1 + 26689 0.79 0.302957
Target:  5'- gAGGCGACauCGUCGAUAUCGGCGuagUCAUa -3'
miRNA:   3'- -UCUGCUG--GCAGCUAUAGCUGC---AGUGc -5'
16407 5' -51.4 NC_004084.1 + 26864 0.74 0.554358
Target:  5'- cGACGAUUGUCGGUAgcgCGAUGUCcuccgagGCGa -3'
miRNA:   3'- uCUGCUGGCAGCUAUa--GCUGCAG-------UGC- -5'
16407 5' -51.4 NC_004084.1 + 27059 0.69 0.801145
Target:  5'- uGuCGAUCGcgCGAUGcUCGACGUCgACGa -3'
miRNA:   3'- uCuGCUGGCa-GCUAU-AGCUGCAG-UGC- -5'
16407 5' -51.4 NC_004084.1 + 27475 0.7 0.781552
Target:  5'- cGGCGuCC-UCGAgcUCGACGUCgACGa -3'
miRNA:   3'- uCUGCuGGcAGCUauAGCUGCAG-UGC- -5'
16407 5' -51.4 NC_004084.1 + 27568 0.66 0.936307
Target:  5'- uGACGAgCGggcCGcccaccucuuUCGACGUCGCGa -3'
miRNA:   3'- uCUGCUgGCa--GCuau-------AGCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 29766 0.68 0.846845
Target:  5'- cGAUGACCGUccugcaucgCGAcggGUCGGCGUaCACc -3'
miRNA:   3'- uCUGCUGGCA---------GCUa--UAGCUGCA-GUGc -5'
16407 5' -51.4 NC_004084.1 + 30217 0.66 0.942417
Target:  5'- gAGACcauGACCGgaggCGAUGUccgcggCGACGUCGa- -3'
miRNA:   3'- -UCUG---CUGGCa---GCUAUA------GCUGCAGUgc -5'
16407 5' -51.4 NC_004084.1 + 31392 0.71 0.730045
Target:  5'- gGGGCGGacuaCGcCGAUAUCGGCGaagUCGCa -3'
miRNA:   3'- -UCUGCUg---GCaGCUAUAGCUGC---AGUGc -5'
16407 5' -51.4 NC_004084.1 + 32007 0.66 0.942417
Target:  5'- uGGAgGGCucgaauuaCGcCGAUAUCGAugcCGUCGCGu -3'
miRNA:   3'- -UCUgCUG--------GCaGCUAUAGCU---GCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 33336 0.67 0.907884
Target:  5'- uGACGACCGuaccaccacugUCGuuuucuUCGACGUCgACa -3'
miRNA:   3'- uCUGCUGGC-----------AGCuau---AGCUGCAG-UGc -5'
16407 5' -51.4 NC_004084.1 + 35227 0.71 0.730045
Target:  5'- cGACGAUCG-CGA--UCGACGUCGa- -3'
miRNA:   3'- uCUGCUGGCaGCUauAGCUGCAGUgc -5'
16407 5' -51.4 NC_004084.1 + 35903 0.69 0.83812
Target:  5'- gAGGCGAUCGUCGucgaggaUGACGcguUCACGa -3'
miRNA:   3'- -UCUGCUGGCAGCuaua---GCUGC---AGUGC- -5'
16407 5' -51.4 NC_004084.1 + 36155 0.67 0.886918
Target:  5'- --uCGACUGgaUCGAcGUCGACGUC-CGg -3'
miRNA:   3'- ucuGCUGGC--AGCUaUAGCUGCAGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.