miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16407 5' -51.4 NC_004084.1 + 36689 0.69 0.820029
Target:  5'- aGGAgGACUG-CGA---UGACGUCGCGg -3'
miRNA:   3'- -UCUgCUGGCaGCUauaGCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 37047 0.71 0.719402
Target:  5'- -cACGGUCGUCGAUGUCGAUGUUcuCGg -3'
miRNA:   3'- ucUGCUGGCAGCUAUAGCUGCAGu-GC- -5'
16407 5' -51.4 NC_004084.1 + 38312 0.73 0.610045
Target:  5'- cGACGAgcgugaCGUCGAUAUCGACGgUCGu- -3'
miRNA:   3'- uCUGCUg-----GCAGCUAUAGCUGC-AGUgc -5'
16407 5' -51.4 NC_004084.1 + 38357 0.67 0.894174
Target:  5'- cGGCG-UCGUCGGUAUCGACa--GCa -3'
miRNA:   3'- uCUGCuGGCAGCUAUAGCUGcagUGc -5'
16407 5' -51.4 NC_004084.1 + 39059 0.66 0.942417
Target:  5'- gGGACG-UUGUCGAUcagcagGUCGcUGUCGCGc -3'
miRNA:   3'- -UCUGCuGGCAGCUA------UAGCuGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 39256 0.69 0.83546
Target:  5'- aGGGCGGCgggaagauggugguCGUCGA--UCG-CGUCGCGg -3'
miRNA:   3'- -UCUGCUG--------------GCAGCUauAGCuGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 40858 0.75 0.481722
Target:  5'- cGAacUGGCCGUCGAgAUCGACGUUcCGg -3'
miRNA:   3'- uCU--GCUGGCAGCUaUAGCUGCAGuGC- -5'
16407 5' -51.4 NC_004084.1 + 41627 0.72 0.665117
Target:  5'- gAGGCGACgGUCcggGAcAUCGACGUCGa- -3'
miRNA:   3'- -UCUGCUGgCAG---CUaUAGCUGCAGUgc -5'
16407 5' -51.4 NC_004084.1 + 41778 0.72 0.665117
Target:  5'- cGGACGA-CGUCGAcgacGagGGCGUCACGa -3'
miRNA:   3'- -UCUGCUgGCAGCUa---UagCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 42322 0.85 0.132832
Target:  5'- cGACGACCGUCGGgacgagAUCGACGagGCGg -3'
miRNA:   3'- uCUGCUGGCAGCUa-----UAGCUGCagUGC- -5'
16407 5' -51.4 NC_004084.1 + 43394 0.66 0.942417
Target:  5'- gAGugG-CCGUCGAcgcUCGACGagcCGCa -3'
miRNA:   3'- -UCugCuGGCAGCUau-AGCUGCa--GUGc -5'
16407 5' -51.4 NC_004084.1 + 43564 0.69 0.810681
Target:  5'- cGGCGGCCGUC-AUccCGACGaggCGCGg -3'
miRNA:   3'- uCUGCUGGCAGcUAuaGCUGCa--GUGC- -5'
16407 5' -51.4 NC_004084.1 + 45669 0.66 0.942417
Target:  5'- cGACGAgaCgGUCGGcGUCGACGagaucgugCGCGg -3'
miRNA:   3'- uCUGCU--GgCAGCUaUAGCUGCa-------GUGC- -5'
16407 5' -51.4 NC_004084.1 + 46400 0.73 0.577153
Target:  5'- cGACGAUCGgcgacggCGAaguUGUUGACGUCGCu -3'
miRNA:   3'- uCUGCUGGCa------GCU---AUAGCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 46999 0.76 0.441772
Target:  5'- gAGACGACCG-CGAguuccucGagGACGUCGCGa -3'
miRNA:   3'- -UCUGCUGGCaGCUa------UagCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 47742 0.66 0.928677
Target:  5'- cGAUGACCGccauccgguuggcgCGAUccaucAUCGACGcCGCGu -3'
miRNA:   3'- uCUGCUGGCa-------------GCUA-----UAGCUGCaGUGC- -5'
16407 5' -51.4 NC_004084.1 + 48030 0.66 0.920502
Target:  5'- uGGACGA-CGaCGAgcUCGACGUCGa- -3'
miRNA:   3'- -UCUGCUgGCaGCUauAGCUGCAGUgc -5'
16407 5' -51.4 NC_004084.1 + 48898 0.75 0.471566
Target:  5'- uGAUGACCGUCGGUcgGUCGGC--CACGa -3'
miRNA:   3'- uCUGCUGGCAGCUA--UAGCUGcaGUGC- -5'
16407 5' -51.4 NC_004084.1 + 49063 0.67 0.901164
Target:  5'- aAGAucgUGACCGUCGAcGUgCGACgGUCGgGa -3'
miRNA:   3'- -UCU---GCUGGCAGCUaUA-GCUG-CAGUgC- -5'
16407 5' -51.4 NC_004084.1 + 49246 0.7 0.751023
Target:  5'- cGAUGACUGaaGAgAUCGACGUcCACGu -3'
miRNA:   3'- uCUGCUGGCagCUaUAGCUGCA-GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.