miRNA display CGI


Results 81 - 95 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16407 5' -51.4 NC_004084.1 + 49341 0.74 0.533967
Target:  5'- cGGCGAUCGugUCGAggugaucGUCGACGUCGCc -3'
miRNA:   3'- uCUGCUGGC--AGCUa------UAGCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 49534 0.68 0.871629
Target:  5'- cGGACGAUCGagGugAUCGGCGUguCGa -3'
miRNA:   3'- -UCUGCUGGCagCuaUAGCUGCAguGC- -5'
16407 5' -51.4 NC_004084.1 + 49829 0.68 0.846845
Target:  5'- cGACGAguUCaUCGAaucacucGUCGACGUCGCGa -3'
miRNA:   3'- uCUGCU--GGcAGCUa------UAGCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 50175 0.69 0.820029
Target:  5'- -aGCGGC-GUCGAUcgucUCGACGUCGCc -3'
miRNA:   3'- ucUGCUGgCAGCUAu---AGCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 51187 0.73 0.588083
Target:  5'- cGcCGAUCGUCGAgGUCGGCGcuggCGCGg -3'
miRNA:   3'- uCuGCUGGCAGCUaUAGCUGCa---GUGC- -5'
16407 5' -51.4 NC_004084.1 + 51226 0.75 0.491983
Target:  5'- cGugGugCGUCGAgcagcUCGACGUC-CGg -3'
miRNA:   3'- uCugCugGCAGCUau---AGCUGCAGuGC- -5'
16407 5' -51.4 NC_004084.1 + 51410 0.66 0.932014
Target:  5'- cGACG-CCGUCGAggccuUCGAgGgcgaCACGc -3'
miRNA:   3'- uCUGCuGGCAGCUau---AGCUgCa---GUGC- -5'
16407 5' -51.4 NC_004084.1 + 52095 0.71 0.730045
Target:  5'- cGACGuuaccGCCGg-GAUGUCGACGUCGg- -3'
miRNA:   3'- uCUGC-----UGGCagCUAUAGCUGCAGUgc -5'
16407 5' -51.4 NC_004084.1 + 52473 0.72 0.643108
Target:  5'- cGAUGGCCGaggCGAagcgCGACGUCAUGu -3'
miRNA:   3'- uCUGCUGGCa--GCUaua-GCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 52939 0.72 0.643108
Target:  5'- cGACGaucugGCCGUCGGcGUCGucgugauCGUCGCGa -3'
miRNA:   3'- uCUGC-----UGGCAGCUaUAGCu------GCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 53595 0.66 0.92582
Target:  5'- cGACGAUCGgcgagcuUUGAUcUCGACGUUgACGa -3'
miRNA:   3'- uCUGCUGGC-------AGCUAuAGCUGCAG-UGC- -5'
16407 5' -51.4 NC_004084.1 + 54181 0.68 0.846845
Target:  5'- gAGGCGACCacGUCGGguggggaacgAUCuGugGUCACu -3'
miRNA:   3'- -UCUGCUGG--CAGCUa---------UAG-CugCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 54209 0.65 0.945799
Target:  5'- --cCGACCGUCagcggcucgagucgGAUcUCGACGUCggaGCGa -3'
miRNA:   3'- ucuGCUGGCAG--------------CUAuAGCUGCAG---UGC- -5'
16407 5' -51.4 NC_004084.1 + 54582 0.72 0.643108
Target:  5'- cGGugGAgCCGUCG---UCGGCGUCgACGa -3'
miRNA:   3'- -UCugCU-GGCAGCuauAGCUGCAG-UGC- -5'
16407 5' -51.4 NC_004084.1 + 57125 0.66 0.920502
Target:  5'- aGGACGuCC-UCGGUGUCGcCGUCu-- -3'
miRNA:   3'- -UCUGCuGGcAGCUAUAGCuGCAGugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.