Results 21 - 40 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16407 | 5' | -51.4 | NC_004084.1 | + | 46999 | 0.76 | 0.441772 |
Target: 5'- gAGACGACCG-CGAguuccucGagGACGUCGCGa -3' miRNA: 3'- -UCUGCUGGCaGCUa------UagCUGCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 46400 | 0.73 | 0.577153 |
Target: 5'- cGACGAUCGgcgacggCGAaguUGUUGACGUCGCu -3' miRNA: 3'- uCUGCUGGCa------GCU---AUAGCUGCAGUGc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 45669 | 0.66 | 0.942417 |
Target: 5'- cGACGAgaCgGUCGGcGUCGACGagaucgugCGCGg -3' miRNA: 3'- uCUGCU--GgCAGCUaUAGCUGCa-------GUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 43564 | 0.69 | 0.810681 |
Target: 5'- cGGCGGCCGUC-AUccCGACGaggCGCGg -3' miRNA: 3'- uCUGCUGGCAGcUAuaGCUGCa--GUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 43394 | 0.66 | 0.942417 |
Target: 5'- gAGugG-CCGUCGAcgcUCGACGagcCGCa -3' miRNA: 3'- -UCugCuGGCAGCUau-AGCUGCa--GUGc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 42322 | 0.85 | 0.132832 |
Target: 5'- cGACGACCGUCGGgacgagAUCGACGagGCGg -3' miRNA: 3'- uCUGCUGGCAGCUa-----UAGCUGCagUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 41778 | 0.72 | 0.665117 |
Target: 5'- cGGACGA-CGUCGAcgacGagGGCGUCACGa -3' miRNA: 3'- -UCUGCUgGCAGCUa---UagCUGCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 41627 | 0.72 | 0.665117 |
Target: 5'- gAGGCGACgGUCcggGAcAUCGACGUCGa- -3' miRNA: 3'- -UCUGCUGgCAG---CUaUAGCUGCAGUgc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 40858 | 0.75 | 0.481722 |
Target: 5'- cGAacUGGCCGUCGAgAUCGACGUUcCGg -3' miRNA: 3'- uCU--GCUGGCAGCUaUAGCUGCAGuGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 39256 | 0.69 | 0.83546 |
Target: 5'- aGGGCGGCgggaagauggugguCGUCGA--UCG-CGUCGCGg -3' miRNA: 3'- -UCUGCUG--------------GCAGCUauAGCuGCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 39059 | 0.66 | 0.942417 |
Target: 5'- gGGACG-UUGUCGAUcagcagGUCGcUGUCGCGc -3' miRNA: 3'- -UCUGCuGGCAGCUA------UAGCuGCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 38357 | 0.67 | 0.894174 |
Target: 5'- cGGCG-UCGUCGGUAUCGACa--GCa -3' miRNA: 3'- uCUGCuGGCAGCUAUAGCUGcagUGc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 38312 | 0.73 | 0.610045 |
Target: 5'- cGACGAgcgugaCGUCGAUAUCGACGgUCGu- -3' miRNA: 3'- uCUGCUg-----GCAGCUAUAGCUGC-AGUgc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 37047 | 0.71 | 0.719402 |
Target: 5'- -cACGGUCGUCGAUGUCGAUGUUcuCGg -3' miRNA: 3'- ucUGCUGGCAGCUAUAGCUGCAGu-GC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 36689 | 0.69 | 0.820029 |
Target: 5'- aGGAgGACUG-CGA---UGACGUCGCGg -3' miRNA: 3'- -UCUgCUGGCaGCUauaGCUGCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 36155 | 0.67 | 0.886918 |
Target: 5'- --uCGACUGgaUCGAcGUCGACGUC-CGg -3' miRNA: 3'- ucuGCUGGC--AGCUaUAGCUGCAGuGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 35903 | 0.69 | 0.83812 |
Target: 5'- gAGGCGAUCGUCGucgaggaUGACGcguUCACGa -3' miRNA: 3'- -UCUGCUGGCAGCuaua---GCUGC---AGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 35227 | 0.71 | 0.730045 |
Target: 5'- cGACGAUCG-CGA--UCGACGUCGa- -3' miRNA: 3'- uCUGCUGGCaGCUauAGCUGCAGUgc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 33336 | 0.67 | 0.907884 |
Target: 5'- uGACGACCGuaccaccacugUCGuuuucuUCGACGUCgACa -3' miRNA: 3'- uCUGCUGGC-----------AGCuau---AGCUGCAG-UGc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 32007 | 0.66 | 0.942417 |
Target: 5'- uGGAgGGCucgaauuaCGcCGAUAUCGAugcCGUCGCGu -3' miRNA: 3'- -UCUgCUG--------GCaGCUAUAGCU---GCAGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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