Results 61 - 80 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16407 | 5' | -51.4 | NC_004084.1 | + | 19963 | 0.77 | 0.376655 |
Target: 5'- gAGcCGGCCGUgguugaCGAcGUCGACGUCGCGc -3' miRNA: 3'- -UCuGCUGGCA------GCUaUAGCUGCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 19078 | 0.72 | 0.676079 |
Target: 5'- -cGCGGCCGUCuacGUCGACGUCGa- -3' miRNA: 3'- ucUGCUGGCAGcuaUAGCUGCAGUgc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 18797 | 0.67 | 0.886918 |
Target: 5'- cGAuCGACuCGUCGAg---GACGUCGCc -3' miRNA: 3'- uCU-GCUG-GCAGCUauagCUGCAGUGc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 18425 | 0.66 | 0.926397 |
Target: 5'- uGGACGGgC-UCGAUcUCGAuauaucCGUCACGa -3' miRNA: 3'- -UCUGCUgGcAGCUAuAGCU------GCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 17510 | 0.7 | 0.749985 |
Target: 5'- uGACGGCaucccguCGUCgGAUAUCGauguugaagGCGUCACGa -3' miRNA: 3'- uCUGCUG-------GCAG-CUAUAGC---------UGCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 17334 | 0.67 | 0.907884 |
Target: 5'- cGACGGCCcgcaUCGucucGUCGACGuacUCGCGg -3' miRNA: 3'- uCUGCUGGc---AGCua--UAGCUGC---AGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 17158 | 0.67 | 0.894174 |
Target: 5'- gGGACGAUCGcCGg---CGACGUCgaagGCGa -3' miRNA: 3'- -UCUGCUGGCaGCuauaGCUGCAG----UGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 17043 | 0.69 | 0.810681 |
Target: 5'- -uGCGcCCGUCGAUGcggugacUGACGUCGCa -3' miRNA: 3'- ucUGCuGGCAGCUAUa------GCUGCAGUGc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 16914 | 0.68 | 0.877096 |
Target: 5'- cAGGCGAUCGuggccgggugcgguUCGGcAUCGgcggGCGUCGCGa -3' miRNA: 3'- -UCUGCUGGC--------------AGCUaUAGC----UGCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 16486 | 0.7 | 0.775548 |
Target: 5'- gAGACGACCaUCGGgaUAUCGccacagcaggcgaucGCGUCGCc -3' miRNA: 3'- -UCUGCUGGcAGCU--AUAGC---------------UGCAGUGc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 16428 | 0.71 | 0.719402 |
Target: 5'- aAGACGG-CGUCGAUGUgGGCaucgGUUACGg -3' miRNA: 3'- -UCUGCUgGCAGCUAUAgCUG----CAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 15019 | 0.67 | 0.894174 |
Target: 5'- -uGCGGCuCGUCGAgcGUCGACGgcCACu -3' miRNA: 3'- ucUGCUG-GCAGCUa-UAGCUGCa-GUGc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 14085 | 0.76 | 0.441772 |
Target: 5'- cGACGuagaCGUCGAUGUCGuCGUgGCGg -3' miRNA: 3'- uCUGCug--GCAGCUAUAGCuGCAgUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 12132 | 0.67 | 0.901164 |
Target: 5'- cGACGAcuacgacuCCGUCGAcgaagcgAUgGAUGUCGCa -3' miRNA: 3'- uCUGCU--------GGCAGCUa------UAgCUGCAGUGc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 11922 | 0.73 | 0.610045 |
Target: 5'- cGGCGACCGg------CGACGUCGCGa -3' miRNA: 3'- uCUGCUGGCagcuauaGCUGCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 11065 | 0.66 | 0.938901 |
Target: 5'- gGGGCGGCCGccgacgaacaugugcUUGAgGUCGGCGacgagaucgccguUCGCGg -3' miRNA: 3'- -UCUGCUGGC---------------AGCUaUAGCUGC-------------AGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 11007 | 0.66 | 0.937353 |
Target: 5'- cGACGuCCuUCGGcuUCGuCGUCGCGc -3' miRNA: 3'- uCUGCuGGcAGCUauAGCuGCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 9423 | 0.69 | 0.810681 |
Target: 5'- cGACacgGACCGcgCGAUGggccgCGACGUCgACGa -3' miRNA: 3'- uCUG---CUGGCa-GCUAUa----GCUGCAG-UGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 9348 | 0.77 | 0.413074 |
Target: 5'- --cCGACCGUCGcacGUCGACgGUCACGa -3' miRNA: 3'- ucuGCUGGCAGCua-UAGCUG-CAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 9095 | 0.78 | 0.359275 |
Target: 5'- cGcCGACCGggCGAUGUCGACGagcUCACGc -3' miRNA: 3'- uCuGCUGGCa-GCUAUAGCUGC---AGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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