Results 21 - 40 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16407 | 5' | -51.4 | NC_004084.1 | + | 16914 | 0.68 | 0.877096 |
Target: 5'- cAGGCGAUCGuggccgggugcgguUCGGcAUCGgcggGCGUCGCGa -3' miRNA: 3'- -UCUGCUGGC--------------AGCUaUAGC----UGCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 36155 | 0.67 | 0.886918 |
Target: 5'- --uCGACUGgaUCGAcGUCGACGUC-CGg -3' miRNA: 3'- ucuGCUGGC--AGCUaUAGCUGCAGuGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 53595 | 0.66 | 0.92582 |
Target: 5'- cGACGAUCGgcgagcuUUGAUcUCGACGUUgACGa -3' miRNA: 3'- uCUGCUGGC-------AGCUAuAGCUGCAG-UGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 32007 | 0.66 | 0.942417 |
Target: 5'- uGGAgGGCucgaauuaCGcCGAUAUCGAugcCGUCGCGu -3' miRNA: 3'- -UCUgCUG--------GCaGCUAUAGCU---GCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 31392 | 0.71 | 0.730045 |
Target: 5'- gGGGCGGacuaCGcCGAUAUCGGCGaagUCGCa -3' miRNA: 3'- -UCUGCUg---GCaGCUAUAGCUGC---AGUGc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 22944 | 0.68 | 0.846845 |
Target: 5'- cGGCGAUCGccccUCGAccugcuccugGUCGAUGUCACu -3' miRNA: 3'- uCUGCUGGC----AGCUa---------UAGCUGCAGUGc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 38357 | 0.67 | 0.894174 |
Target: 5'- cGGCG-UCGUCGGUAUCGACa--GCa -3' miRNA: 3'- uCUGCuGGCAGCUAUAGCUGcagUGc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 30217 | 0.66 | 0.942417 |
Target: 5'- gAGACcauGACCGgaggCGAUGUccgcggCGACGUCGa- -3' miRNA: 3'- -UCUG---CUGGCa---GCUAUA------GCUGCAGUgc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 29766 | 0.68 | 0.846845 |
Target: 5'- cGAUGACCGUccugcaucgCGAcggGUCGGCGUaCACc -3' miRNA: 3'- uCUGCUGGCA---------GCUa--UAGCUGCA-GUGc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 39059 | 0.66 | 0.942417 |
Target: 5'- gGGACG-UUGUCGAUcagcagGUCGcUGUCGCGc -3' miRNA: 3'- -UCUGCuGGCAGCUA------UAGCuGCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 15019 | 0.67 | 0.894174 |
Target: 5'- -uGCGGCuCGUCGAgcGUCGACGgcCACu -3' miRNA: 3'- ucUGCUG-GCAGCUa-UAGCUGCa-GUGc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 22797 | 0.68 | 0.871629 |
Target: 5'- aGGaACGAagCGUCGAgag-GGCGUCACGg -3' miRNA: 3'- -UC-UGCUg-GCAGCUauagCUGCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 23075 | 0.67 | 0.901164 |
Target: 5'- cGGCGACgCGaCGAgGUgGACGUCgGCGa -3' miRNA: 3'- uCUGCUG-GCaGCUaUAgCUGCAG-UGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 57125 | 0.66 | 0.920502 |
Target: 5'- aGGACGuCC-UCGGUGUCGcCGUCu-- -3' miRNA: 3'- -UCUGCuGGcAGCUAUAGCuGCAGugc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 27568 | 0.66 | 0.936307 |
Target: 5'- uGACGAgCGggcCGcccaccucuuUCGACGUCGCGa -3' miRNA: 3'- uCUGCUgGCa--GCuau-------AGCUGCAGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 11065 | 0.66 | 0.938901 |
Target: 5'- gGGGCGGCCGccgacgaacaugugcUUGAgGUCGGCGacgagaucgccguUCGCGg -3' miRNA: 3'- -UCUGCUGGC---------------AGCUaUAGCUGC-------------AGUGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 38312 | 0.73 | 0.610045 |
Target: 5'- cGACGAgcgugaCGUCGAUAUCGACGgUCGu- -3' miRNA: 3'- uCUGCUg-----GCAGCUAUAGCUGC-AGUgc -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 37047 | 0.71 | 0.719402 |
Target: 5'- -cACGGUCGUCGAUGUCGAUGUUcuCGg -3' miRNA: 3'- ucUGCUGGCAGCUAUAGCUGCAGu-GC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 27059 | 0.69 | 0.801145 |
Target: 5'- uGuCGAUCGcgCGAUGcUCGACGUCgACGa -3' miRNA: 3'- uCuGCUGGCa-GCUAU-AGCUGCAG-UGC- -5' |
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16407 | 5' | -51.4 | NC_004084.1 | + | 35903 | 0.69 | 0.83812 |
Target: 5'- gAGGCGAUCGUCGucgaggaUGACGcguUCACGa -3' miRNA: 3'- -UCUGCUGGCAGCuaua---GCUGC---AGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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