miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16407 5' -51.4 NC_004084.1 + 19963 0.77 0.376655
Target:  5'- gAGcCGGCCGUgguugaCGAcGUCGACGUCGCGc -3'
miRNA:   3'- -UCuGCUGGCA------GCUaUAGCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 4924 0.67 0.901164
Target:  5'- cGACGACU-UCGccGUCGACGUaCugGa -3'
miRNA:   3'- uCUGCUGGcAGCuaUAGCUGCA-GugC- -5'
16407 5' -51.4 NC_004084.1 + 36689 0.69 0.820029
Target:  5'- aGGAgGACUG-CGA---UGACGUCGCGg -3'
miRNA:   3'- -UCUgCUGGCaGCUauaGCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 9095 0.78 0.359275
Target:  5'- cGcCGACCGggCGAUGUCGACGagcUCACGc -3'
miRNA:   3'- uCuGCUGGCa-GCUAUAGCUGC---AGUGC- -5'
16407 5' -51.4 NC_004084.1 + 35903 0.69 0.83812
Target:  5'- gAGGCGAUCGUCGucgaggaUGACGcguUCACGa -3'
miRNA:   3'- -UCUGCUGGCAGCuaua---GCUGC---AGUGC- -5'
16407 5' -51.4 NC_004084.1 + 14085 0.76 0.441772
Target:  5'- cGACGuagaCGUCGAUGUCGuCGUgGCGg -3'
miRNA:   3'- uCUGCug--GCAGCUAUAGCuGCAgUGC- -5'
16407 5' -51.4 NC_004084.1 + 46400 0.73 0.577153
Target:  5'- cGACGAUCGgcgacggCGAaguUGUUGACGUCGCu -3'
miRNA:   3'- uCUGCUGGCa------GCU---AUAGCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 21988 0.68 0.846845
Target:  5'- cAGACGGCguaCGUCGA---CGACG-CGCGg -3'
miRNA:   3'- -UCUGCUG---GCAGCUauaGCUGCaGUGC- -5'
16407 5' -51.4 NC_004084.1 + 46999 0.76 0.441772
Target:  5'- gAGACGACCG-CGAguuccucGagGACGUCGCGa -3'
miRNA:   3'- -UCUGCUGGCaGCUa------UagCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 51187 0.73 0.588083
Target:  5'- cGcCGAUCGUCGAgGUCGGCGcuggCGCGg -3'
miRNA:   3'- uCuGCUGGCAGCUaUAGCUGCa---GUGC- -5'
16407 5' -51.4 NC_004084.1 + 8540 0.69 0.83812
Target:  5'- -cGCGACC-UCGAgAUCGACGUC-Cu -3'
miRNA:   3'- ucUGCUGGcAGCUaUAGCUGCAGuGc -5'
16407 5' -51.4 NC_004084.1 + 43564 0.69 0.810681
Target:  5'- cGGCGGCCGUC-AUccCGACGaggCGCGg -3'
miRNA:   3'- uCUGCUGGCAGcUAuaGCUGCa--GUGC- -5'
16407 5' -51.4 NC_004084.1 + 17043 0.69 0.810681
Target:  5'- -uGCGcCCGUCGAUGcggugacUGACGUCGCa -3'
miRNA:   3'- ucUGCuGGCAGCUAUa------GCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 9423 0.69 0.810681
Target:  5'- cGACacgGACCGcgCGAUGggccgCGACGUCgACGa -3'
miRNA:   3'- uCUG---CUGGCa-GCUAUa----GCUGCAG-UGC- -5'
16407 5' -51.4 NC_004084.1 + 775 0.69 0.810681
Target:  5'- cGAuCGGCuCGUCGAgg-CGACG-CGCGa -3'
miRNA:   3'- uCU-GCUG-GCAGCUauaGCUGCaGUGC- -5'
16407 5' -51.4 NC_004084.1 + 27475 0.7 0.781552
Target:  5'- cGGCGuCC-UCGAgcUCGACGUCgACGa -3'
miRNA:   3'- uCUGCuGGcAGCUauAGCUGCAG-UGC- -5'
16407 5' -51.4 NC_004084.1 + 26399 0.72 0.665117
Target:  5'- cGACGGCa-UCGAUAUCGGCGUaauuCGa -3'
miRNA:   3'- uCUGCUGgcAGCUAUAGCUGCAgu--GC- -5'
16407 5' -51.4 NC_004084.1 + 52473 0.72 0.643108
Target:  5'- cGAUGGCCGaggCGAagcgCGACGUCAUGu -3'
miRNA:   3'- uCUGCUGGCa--GCUaua-GCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 11922 0.73 0.610045
Target:  5'- cGGCGACCGg------CGACGUCGCGa -3'
miRNA:   3'- uCUGCUGGCagcuauaGCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 45669 0.66 0.942417
Target:  5'- cGACGAgaCgGUCGGcGUCGACGagaucgugCGCGg -3'
miRNA:   3'- uCUGCU--GgCAGCUaUAGCUGCa-------GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.