miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16407 5' -51.4 NC_004084.1 + 26864 0.74 0.554358
Target:  5'- cGACGAUUGUCGGUAgcgCGAUGUCcuccgagGCGa -3'
miRNA:   3'- uCUGCUGGCAGCUAUa--GCUGCAG-------UGC- -5'
16407 5' -51.4 NC_004084.1 + 46999 0.76 0.441772
Target:  5'- gAGACGACCG-CGAguuccucGagGACGUCGCGa -3'
miRNA:   3'- -UCUGCUGGCaGCUa------UagCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 9348 0.77 0.413074
Target:  5'- --cCGACCGUCGcacGUCGACgGUCACGa -3'
miRNA:   3'- ucuGCUGGCAGCua-UAGCUG-CAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 26689 0.79 0.302957
Target:  5'- gAGGCGACauCGUCGAUAUCGGCGuagUCAUa -3'
miRNA:   3'- -UCUGCUG--GCAGCUAUAGCUGC---AGUGc -5'
16407 5' -51.4 NC_004084.1 + 775 0.69 0.810681
Target:  5'- cGAuCGGCuCGUCGAgg-CGACG-CGCGa -3'
miRNA:   3'- uCU-GCUG-GCAGCUauaGCUGCaGUGC- -5'
16407 5' -51.4 NC_004084.1 + 9423 0.69 0.810681
Target:  5'- cGACacgGACCGcgCGAUGggccgCGACGUCgACGa -3'
miRNA:   3'- uCUG---CUGGCa-GCUAUa----GCUGCAG-UGC- -5'
16407 5' -51.4 NC_004084.1 + 43394 0.66 0.942417
Target:  5'- gAGugG-CCGUCGAcgcUCGACGagcCGCa -3'
miRNA:   3'- -UCugCuGGCAGCUau-AGCUGCa--GUGc -5'
16407 5' -51.4 NC_004084.1 + 51410 0.66 0.932014
Target:  5'- cGACG-CCGUCGAggccuUCGAgGgcgaCACGc -3'
miRNA:   3'- uCUGCuGGCAGCUau---AGCUgCa---GUGC- -5'
16407 5' -51.4 NC_004084.1 + 7803 0.66 0.932014
Target:  5'- --cUGACCGUCGAcgaccUCGACG-CugGa -3'
miRNA:   3'- ucuGCUGGCAGCUau---AGCUGCaGugC- -5'
16407 5' -51.4 NC_004084.1 + 18425 0.66 0.926397
Target:  5'- uGGACGGgC-UCGAUcUCGAuauaucCGUCACGa -3'
miRNA:   3'- -UCUGCUgGcAGCUAuAGCU------GCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 48030 0.66 0.920502
Target:  5'- uGGACGA-CGaCGAgcUCGACGUCGa- -3'
miRNA:   3'- -UCUGCUgGCaGCUauAGCUGCAGUgc -5'
16407 5' -51.4 NC_004084.1 + 20059 0.67 0.914331
Target:  5'- cGAUG-CUGUCGAUAcCGACGaCGCc -3'
miRNA:   3'- uCUGCuGGCAGCUAUaGCUGCaGUGc -5'
16407 5' -51.4 NC_004084.1 + 33336 0.67 0.907884
Target:  5'- uGACGACCGuaccaccacugUCGuuuucuUCGACGUCgACa -3'
miRNA:   3'- uCUGCUGGC-----------AGCuau---AGCUGCAG-UGc -5'
16407 5' -51.4 NC_004084.1 + 23362 0.67 0.907884
Target:  5'- uGGCGACCGccugcCGGUAUCaGGCGaUCAuCGa -3'
miRNA:   3'- uCUGCUGGCa----GCUAUAG-CUGC-AGU-GC- -5'
16407 5' -51.4 NC_004084.1 + 6795 0.67 0.907225
Target:  5'- gGGACGuucUCGaaggcaaUCGAUGUCGccagagACGUCACGa -3'
miRNA:   3'- -UCUGCu--GGC-------AGCUAUAGC------UGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 12132 0.67 0.901164
Target:  5'- cGACGAcuacgacuCCGUCGAcgaagcgAUgGAUGUCGCa -3'
miRNA:   3'- uCUGCU--------GGCAGCUa------UAgCUGCAGUGc -5'
16407 5' -51.4 NC_004084.1 + 8540 0.69 0.83812
Target:  5'- -cGCGACC-UCGAgAUCGACGUC-Cu -3'
miRNA:   3'- ucUGCUGGcAGCUaUAGCUGCAGuGc -5'
16407 5' -51.4 NC_004084.1 + 39256 0.69 0.83546
Target:  5'- aGGGCGGCgggaagauggugguCGUCGA--UCG-CGUCGCGg -3'
miRNA:   3'- -UCUGCUG--------------GCAGCUauAGCuGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 43564 0.69 0.810681
Target:  5'- cGGCGGCCGUC-AUccCGACGaggCGCGg -3'
miRNA:   3'- uCUGCUGGCAGcUAuaGCUGCa--GUGC- -5'
16407 5' -51.4 NC_004084.1 + 17043 0.69 0.810681
Target:  5'- -uGCGcCCGUCGAUGcggugacUGACGUCGCa -3'
miRNA:   3'- ucUGCuGGCAGCUAUa------GCUGCAGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.